LOC110495449 (LOC106574744)


Basic Information

Item Value
gene id LOC110495449
gene name LOC106574744
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15333385 ~ 15344802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570717.2
GCCTTGAAACCGCCGAGTTCCATGTTTGTATCTTCAAATTGAGAGCGGAGTTGAACTCCATGTTGAAACAAAGTTACCAACTCACTTTTAAATGTATATAACTTTTATTTGTAGATTTTATACCGTTCTGGTACGTCATTGAATATTCGAGAAATGTGATCGTTTGGATGCGTAATGTATTTAAATACTGTTTGCGGTTATGTAACTTTGTGCACATTTATAATTTAATGTTCCTAGTCAGCGAACAATCTAACACGGAGCAAAGTTTTTAGTTTCTATTGTGGATAAAGTCTGGTGCAATGGACCACCAGTCCTCAATAATCACGCAAGTTAGTCGAGATgaagaggggaatagagagaaggGTCCCCCACCCTCGTCGTCTAAGAAGCCCAGGAGTCGAGGCCTGTTCCACAGCCTCTTCTGCTGCCTATGTCATGACCAGGCTGAGCCCCCGCCGGTCAACAACAACGCCCCGCTACTGGTGGAGGAGAACGGAACTGTCTCCAAGGTCCAGGTCAGACCGCTGCTTCCTCAGGCCAAGTCAAAAGACGCAGGGAAGATCTGTGTTGTCATAGACCTGGATGAAACACTGGTCCACAGCTCATTCAAGCCGGTGAACAATGCTGATTTTATCATTCCCGTAGAGATCGATGGAACTGTTCATCAGGTATATGTGTTGAAGCGACCTCACGTGGATGAGTTCCTTAAGAGGATGGGAGAGCTGTTTGAATGTATTCTGTTCACAGCTAGCCTGGCTAAGTATGCTGACCCAGTGTCAGACCTGCTGGATAAGTGGGGTGCGTTCCGCGGCCGTCTGTTCCGTGAGTCGTGTGTGTTCCACCGGGGGAACTACGTGAAGGACCTGAGTCGTCTGGGAAGGGACCTGAACAAGGTCATCATCATAGACAACTCCCCAGCCTCCTACGTCTTCCACCCAGACAACGCTGTGCCTGTGGCGTCGTGGTTCGATGACATGGCCGACACCGAGCTCCTGGATCTAATCCCCTTCTTCGAAGGGCTCAGTAAAGTGGAGGATGTCTACACGGTGCTCAGGCAACAGAGGGACTCCAGCTAGCAGTGCTGTCAGTCACCCTACCCCTCTACTACCGCCATCTACAGGACAGACCGAGAACCGCAGCCTTAAAGCGTCTTCACACCAACCGTACACCCCCCTCAGCCTACCGTCCACGAGATCAACCACAAGACTTTCACCTCCAAACATAGGGAAACATAGGACTTGACCCTCCAGAACACGATCTACCATCCCTCAACCACAGATGGGCTTGTGTAGATGGATGTTGTGGGTTATAATGAGTTAGGTTTTTATACAGTGCCTTTCATCAAATGTCATTGGAGCATACAGAACAGTCAAGTAGAGGGAATCTACCGCGTTCTTCACAATGAAGAAAAAACATGTAGTAGCAAGGTAATGGGAGAGAACCCCCAGGATCCAATCAGAATCAGTTCTCCAACGCCGGGTTGGAGTCGATAAGTTTCCTGAAGACCGAACCGTTCTAGAACTCTCTATGGAAAAGCAAATGATACTGTATGAATGGATATTTACTACTTTTAACACTttaatgtgtttttttatttccTTCACCAAGAGACAATTTAACATTTTTAACAAGCAAAGTATTGGCTTTGTGTAAGTCAAGTGGTTTTACTTCTTTCATCGCTCAGCTAGTATCATAATGACTAGCACAATGGGCATCAGTACTTGTTAAAGGGGATGGAATCATAGAGAGGGACATTTATCAGTTACTGCAGCTATCAAAACGTTCCATGTCCCTTAATCGTTATTTGTTTCATTTAGTTTTTTATTAAAACCATAGGAATATGTGCGATAATGTGCCAGATAACATTTATACGGGGTAATGGCACCGTTTTCATAACAAATACAGTAGTCAGATGACTGAAATGCACCTTAAATTACAATATAATCTTTTAGGATTTTTTTGGATTACATTGTCTGTGGACCATGGACCTcaacccagacagactaaatgCTCCAGCTCAGACACATGGACACAGTACCATGTACACACAGTACCATTCAATGGCCTGGAAAACCCTTGGTATTCTGCAAACGGACCTGGATATGTGTTGGAAAAACATATTTAGATTCTGTCCAGGCAAACTTGGTCGTCCCTTTGCTGCAGTATCAACGCTACAGTCATGGAGGAGGGCTGGGCGACTATATTGTGAATACCGGTATGGATCCACATACCGCTATATATTTTTACAATTACAGAATTTTGATACAGTGCTAAATTAAAGGAGAAGTTATACTAATTGGACTAGTTCACTGTCAGTTttgtcctggtttggttgagtataaaaccatcagaatggagaaagcccATTTTAAAATCACAAAGAATTTATTTGTTGCCATTCTAGGTCATGCACTAATCATGAAACACATttagacaaaaaatatatattttgtctgTAACGCCCTGCCTTACCATGGAGAAAAGGTGTTGAGACTGTGTGTTGGTCATCTGGTTTTGACAAGCACACTTCTCCCTCCTCTTACTGGAAACAGTACTTGAATACTTTCCCTTTTTCATGACCTCTTTTTAAAGGACTGCAAATACTATGCTTCTTTAGACCAGATTGTAGGATTTGGGTAGTTTGGTTTTTAAGCTTCTGACACAAGTTAGGACTATATTAATTGGTACTTACCTGGGTTTggaacaataaaataaattgttattTGTAAGTAAAAACTAAGATGGTCTATCAGGAAGTGAACAGGAAGAGTAGTTTAATGGATTGAGTGATTCGTATCGATTGATACTGTTTTATGAATGCATGGGGAAAAGCCACTGTGTTGAAGTTGACTAAAGGCCTACTAAAATACCTTGTGAAATAAGATGATTCAGAGTTTAAATAACCGTACACCCATGATAAATCTATCAGTattaagaaataat

Function

NR:

description
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1

GO: NA

KEGG:

id description
K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570717.2 True 2943 mRNA 0.43 7 15333385 15344802

Neighbor

gene id symbol gene type direction distance location
LOC110496998 LOC106592612 coding upstream 998 15276573 ~ 15332387 (+)
LOC110495444 LOC106575602 coding upstream 66863 15256249 ~ 15266522 (+)
LOC110495440 LOC106575601 coding upstream 81433 15207355 ~ 15251952 (+)
LOC110495435 LOC100194500 coding upstream 147040 15176401 ~ 15186345 (+)
LOC110495438 tns1 coding upstream 200051 14907954 ~ 15133334 (+)
LOC110495439 LOC106574706 coding downstream 74259 15419061 ~ 15490199 (+)
LOC110495446 LOC106575524 coding downstream 158212 15503014 ~ 15536810 (+)
LOC110495448 LOC106575529 coding downstream 210057 15554859 ~ 15563239 (+)
LOC110495441 fam171b coding downstream 241106 15585908 ~ 15596051 (+)
LOC110495451 fbx36 coding downstream 262681 15603978 ~ 15615215 (+)
G1519937 NA non-coding upstream 17836 15315337 ~ 15315549 (+)
G1519932 NA non-coding upstream 39774 15293310 ~ 15293611 (+)
G1519929 NA non-coding upstream 46356 15286808 ~ 15287029 (+)
G1519925 NA non-coding upstream 63566 15269521 ~ 15269819 (+)
G1519875 NA non-coding upstream 78550 15254286 ~ 15254835 (+)
G1519940 NA non-coding downstream 2606 15347408 ~ 15348810 (+)
G1519942 LOC106574694 non-coding downstream 4144 15348946 ~ 15349227 (+)
G1519951 LOC106575610 non-coding downstream 13608 15358410 ~ 15399001 (+)
G1519955 NA non-coding downstream 16109 15360911 ~ 15365587 (+)
G1519959 NA non-coding downstream 29980 15374782 ~ 15387181 (+)
il8r il8r other upstream 433213 14898154 ~ 14901354 (+)
G1519733 NA other upstream 518499 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 776039 14556326 ~ 14558589 (+)
G1519538 NA other upstream 834248 14498786 ~ 14499137 (+)
G1520649 NA other downstream 411691 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 451550 15796262 ~ 15801788 (+)
G1520742 NA other downstream 574355 15919157 ~ 15922899 (+)
G1520748 NA other downstream 593428 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 1120711 16454118 ~ 16468453 (+)

Expression


Co-expression Network