LOC110495639 (LOC106575596)


Basic Information

Item Value
gene id LOC110495639
gene name LOC106575596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15721333 ~ 15723189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951984.1
CCTTACTTAGATCCAGCTCTCACCCCcgctctcctctggtctctcccCAGGGTAGAGGTGTGTGTTCTGGGCCAGAGGAGCAGGAGAGATGACCTGGGGGACCCTGTATGCCCAGCTGGCTGGTGTGAACCGCCACTCCACCAGCCTGGGGAAGGTGTGGctgtctgtcctcttcatcttccgTGTCACCGTGCTGGTCCTGGCGGCCGAAAGCGTCTGGGGGGACGAACAGAGTGACTTTGTCTGCAACACCCTGCAGCCGGGCTGCGAGAACGTCTGCTACGACCACTTCTTCCCCGTGTCCCACATCAGGCTCTGGTGTCTGCAGCTTGTCTTCGTCTCCACGCCCGCTCTCCTCGTCGCCATGTACGTGGCCTACCGTAATCACGGCGACAAACGCCAGGTCCTGCAGCAGGGTTCAGTCGGGGGGCGTTGCCGCAGCGACAAGGCCCAGGCGGCCCAGGAGGCTGAGCTAGAGAGCCTGAGGAGGCGGAGGCTGCCAATCGCCGGGCCGCTGTGGTGGACGTACGCCTGTAGTCTGGTCTTCCGCCTGCTGTTCGAGGGAGGCTTCATGTATGCTCTGTACGTGTTGTACGACGGCTTCCAGATGCCCAGGCTGGTCCAGTGTGACCAGTGGCCCTGTCCCAACGTGGTGGACTGCTTTGTCTCCCGCCCCACGGAAAAAACTGTCTTCACCGTTTTCATGGCCGCCTCCTCCTGCGTCTGTATGGCTCTCAACATGGccgaactggcctacctggtcgcCAAGGCTATCGCTTGGTGCCCGTCATCACGGCGCAGAGGGGGGAAACAGAAAGGGAAGGGTGCAAACTGTTCCTCAACCTCTTCCAAAGACAAGACTGCGCAGCAGAACAAGAAGAATGAGAAGTTGTTGTCGTCCTCTTCGTCTGGGTCCACCTGCAGCAAGGCGGTGTGAGGACGGGGGAGCTATAGACATAGcgtacatatgcacacacagacGTGCAAAACatcagtagcctacagtacacacacaaacacactgaatcATAAATATGTGTAAACACTGTGTAGTCCACTCCAGACATGCACAGATCTCCTTCCCCGCTTCAGTCATTGGAGTCACTACGCCATCTAGTGGCCAGTATTCACACATGGCCACTGACCACTCACaggcaaagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagtattgcTCCTATGGAATTGTGATGTTGGTAATGAAGAGATAACATTGTAAATACACTGACAATGGCATTCGCAGAACCACAGTAGAGTGTGACTATGAGTAAAGGCTTACGCAATGACCTAcagaggatgtgtgtgttttaaaaacgctgaaataaaaa

Function

NR:

description
gap junction beta-2 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951984.1 True 1391 mRNA 0.55 2 15721333 15723189

Neighbor

gene id symbol gene type direction distance location
LOC110495637 LOC106575461 coding upstream 46404 15622187 ~ 15674929 (+)
LOC110495451 fbx36 coding upstream 106118 15603978 ~ 15615215 (+)
LOC110495441 fam171b coding upstream 125282 15585908 ~ 15596051 (+)
LOC110495448 LOC106575529 coding upstream 158094 15554859 ~ 15563239 (+)
LOC110495446 LOC106575524 coding upstream 184523 15503014 ~ 15536810 (+)
LOC110495640 LOC106599837 coding downstream 518 15723707 ~ 15730830 (+)
LOC110495642 LOC106574719 coding downstream 11131 15734320 ~ 15749637 (+)
LOC110495643 LOC106575583 coding downstream 52276 15775465 ~ 15795679 (+)
LOC110495645 LOC106575584 coding downstream 67956 15791145 ~ 15794694 (+)
LOC110495644 LOC106575583 coding downstream 73073 15796262 ~ 15801788 (+)
G1520560 NA non-coding upstream 89248 15577484 ~ 15632085 (+)
G1520565 NA non-coding upstream 114515 15590725 ~ 15606818 (+)
G1520677 NA non-coding downstream 101538 15824727 ~ 15825140 (+)
G1520691 NA non-coding downstream 146545 15869734 ~ 15870666 (+)
G1520697 NA non-coding downstream 152962 15876151 ~ 15878418 (+)
G1520704 LOC106595378 non-coding downstream 163153 15886342 ~ 15893668 (+)
G1520705 NA non-coding downstream 163996 15887185 ~ 15887551 (+)
LOC110495440 LOC106575601 other upstream 505089 15207355 ~ 15251952 (+)
il8r il8r other upstream 821161 14898154 ~ 14901354 (+)
G1519733 NA other upstream 906447 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 1163987 14556326 ~ 14558589 (+)
G1519538 NA other upstream 1222196 14498786 ~ 14499137 (+)
G1520649 NA other downstream 33304 15756493 ~ 15816005 (+)
G1520742 NA other downstream 195968 15919157 ~ 15922899 (+)
G1520748 NA other downstream 215041 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 742324 16454118 ~ 16468453 (+)

Expression


Co-expression Network