LOC110495643 (LOC106575583)


Basic Information

Item Value
gene id LOC110495643
gene name LOC106575583
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15775465 ~ 15795679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951983.1
GTCCTTCCAGGttgttggcctgaggtaggactACATAGGTTTAAATAGTGGAATAGGGTGGTGGGGttgtaatgagtgtagggttagatggtgccGTATTTTACTTTTTTCATGTAAAGTATAAAGGATTTATACCCCAgtctagttggtggcggtaatgcaacatttattggatgccaaccgccgttaaacctcatcgaagaagaagaagacgaagaacgCTAAGCAGAATCAGAGAGAGGTTTCAACCAACATTTATTTGATATAGCAAAAGCTACTTTCATAACCATTGCTAATATGTCAAAACTACAAATGTTGAATGTGTTTGTCACCGAGCGTTTGTCGGCGGCTGCTGTGGAAATATTCGGAGCCGTGGAGAAGACCGTAGCAGAGTATCATGAAGAAATCTGCCGTTCAGCGGAGGAGAACGAGCGTTTACGCAGGCTGTTGGATTTGGTTAGCAAACCAGAGATAAAGTTACACAGAGCAGACTTCCAGGTACTGACTCCTGCCGTTCACCCTGAGCAGCAGAACTGTAAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAACCCACACAGATTAAAGAGGAAGAACAGGAGCTCAGACTCAGTCAGGAGGACTCACCTCAGCCCTCACATCTTTACCAAAACCAAACTGTGGATGACGGAGAGAGGAGTATTCTACCTATCATCATAACTGAAGAGATCAAAACAGAACCTGATGGAGAGGGCTACAGAGTAGCAGAACCAACCAGTGATCAGCCCCTTTCAGTTCATCCAGACTGCTCTGCTGCAGTGGAGAAACCATATCGGTGTCAACAATGTGACAAAAGCTTCACACGTAAGGGACACTTGACCATCCATTCAaagatacacacaggagagaaatcttatctGTGCAAACAATGTGACAAAAGCTTCATCCAGAAAGGCGACTTGGACAGACATACAAGGGTACACACAGGAGATAATCCATACCAGTGCAAACAATGTGGCAAAATGTTTAACCAGAAAGGAAGCTTGACCATCCATTCAAGGATACATACAGGGGAGAAACCTTATCAGTGCAAAGACTGTGACAAATCCTTCAACCAGAAGATGGAATTGATATTGCATATGAGAGTTCACACAGGGGAGAGACCATATAATTGTCCTGTATGCAAGAAAAGTTACATGGCATTAAGCTATTTAAGACTTCATCAGCGTGTTCACACCGGGGAGAAACCTTACCAgtgcaaagaatgtggcaaatGCTTTGGTTATAAAGGAAGCTTGAAGTCTCATATGAGCACTCACACAAAAGCTTCAGCCTGAAGTGAGAACAACAAATGATTACTCACATGTGAATTTCTTGTTACATCCAACTtgtaaataattattatatttccTGCCACTTGACAACAAAACAAATGTAGTTGTGTGTTAAAGGTTTTGTTTTTTCAATTTATGTTTTCAGGTTGGACTTTAGGATGTATAGCACTTTAGCACGTTGGACACACCGATttgtgtcacctcgttagtcagtatgtgttacacctgtgctggcccttgtgctatttaagagtggcttGCCCAGTGCTTCAGTTGCCTTGGAATGTGGACGTTCGGTGAACACCTTTTTAGTTGGCTCACTGCTGTATCTAGCACAAAGCACACATTTGGATTTCTGAACAATGAGTTCTTATTCAAATGTTTAACAATAACAGACAGGATATTTGGGCCACTATCTTCTATCTGTACTGACGTTAGAATATTGAAGTAGCCTATTACGCCTTTGACAATCTACATAATGCAGCAAATCATTAGTTGTAATAAAGGACTTTTCTTTTTAAATGGATGTCATTCCTATTAGAGGATGTATTAAACCTGCCTATCAGCTCTATTTCCTGCCTCCTACCCCAACCCTATCCTGACCCATTAGGCAGATGGGAATGTATCTGGGCCTGTTTTCATAAAGCATTTTAGAAgagtgctaatctaggatcagATCACTCCTGTCCATACATTATAATTTAAAAAGCTAAActtatcctagatcagcactcctatttTGAAACGCTTTGAGAACACAACCCCTGACCCTGTGTTACTGTTTAAGGGCAACATTGACCCCCTCCCAGTTGGTGCACCAAAGACATTACAGTATGAAGATGGGTAGAAACTGCTTCTCCAGTAGAAATCCCAATCACACTTGTAGGCAATGCAATGTCGACATTGGCTAGCTAAGTGAATGTGCAGAAACGTCATTGGGTCTTACGGTCACCCTGCcccgaactgcgcatgtgcaggccgtcaaatcaaaggcactcttgaaataaagttgtttttgacaaa
>XM_021570979.2
TCCTTCCAGGttgttggcctgaggtaggactACATAGGTTTAAATAGTGGAATAGGGTGGTGGGGttgtaatgagtgtagggttagatggtgccGTATTTTACTTTTTTCATGTAAAGTATAAAGGATTTATACCCCAgtctagttggtggcggtaatgcaacatttattggatgccaaccgccgttaaacctcatcgaagaagaagaagacgaagaacgCTAAGCAGAATCAGAGAGAGGTTTCAACCAACATTTATTTGATATAGCAAAAGCTACTTTCATAACCATTGCTAATATGTCAAAACTACAAATGTTGAATGTGTTTGTCACCGAGCGTTTGTCGGCGGCTGCTGTGGAAATATTCGGAGCCGTGGAGAAGACCGTAGCAGAGTATCATGAAGAAATCTGCCGTTCAGCGGAGGAGAACGAGCGTTTACGCAGGCTGTTGGATTTGGTTAGCAAACCAGAGATAAAGTTACACAGAGCAGACTTCCAGGTACTGACTCCTGCCGTTCACCCTGAGCAGCAGAACTGTAAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGGACCCAGAACCCACACAGATTAAAGAGGAAGAACAGGAGCTCAGACTCAGTCAGGAGGACTCACCTCAGCCCTCACATCTTTACCAAAACCAAACTGTGGATGACGGAGAGAGGAGTATTCTACCTATCATCATAACTGAAGAGATCAAAACAGAACCTGATGGAGAGGGCTACAGAGTAGCAGAACCAACCAGTGATCAGCCCCTTTCAGTTCATCCAGACTGCTCTGCTGCAGTGGAGAAACCATATCGGTGTCAACAATGTGACAAAAGCTTCACACGTAAGGGACACTTGACCATCCATTCAaagatacacacaggagagaaatcttatctGTGCAAACAATGTGACAAAAGCTTCATCCAGAAAGGCGACTTGGACAGACATACAAGGGTACACACAGGAGATAATCCATACCAGTGCAAACAATGTGGCAAAATGTTTAACCAGAAAGGAAGCTTGACCATCCATTCAAGGATACATACAGGGGAGAAACCTTATCAGTGCAAAGACTGTGACAAATCCTTCAACCAGAAGATGGAATTGATATTGCATATGAGAGTTCACACAGGGGAGAGACCATATAATTGTCCTGTATGCAAGAAAAGTTACATGGCATTAAGCTATTTAAGACTTCATCAGCGTGTTCACACCGGGGAGAAACCTTACCAgtgcaaagaatgtggcaaatGCTTTGGTTATAAAGGAAGCTTGAAGTCTCATATGAGCACTCACACAAAAGCTTCAGCCTGAAGTGAGAACAACAAATGATTACTCACATGAATTTCTTGTTACATCCAACTTGTAAATAATTTGTTATGTTCTATTTTCTGGCATTTGACAACAAAACAAATGTAGTTAGGTGAGAGGAGTGATAAAACATCAGTCAGTATCAGATTCGTAAGCTCATTTTTGCTCTCACTTTTGTTGGATACCTACTGGCCAGGACAATGAGGGAATTTGACAATGCTGGCCCGGCTGAAAAGTGATTGCATCCTTTTTGAAACCAGGCTGCCTCACGGgccactcctccctcaccactTTTGCCTGGTCACATGGCAGGCCATAGTCCGGTGCACCGCGGTTCAGCCTAATCAAACTCCTGCACTGCTGGCTTCAGGAAGTCGTCACAGCTGTGTCTAACAGAGCACACACTTGGATTCCTAAACAACAGGAGTTCATATTCAATTGTTTAACAATGACATACAGGATATTTGGGCCACTATCTTCTATCTGTACTTTTGTCTGCATGTTAGAATATTGAAGTAGCCTATTATGTCTTTGTTGACTATATAATGCAGCAAATATTTTGtatgttgaatttttttttttgggggggggggttagatctGCTTTAATATTGAAGACAGATTGTGGctttcaatgtaattgtctgcatcatttccaatcccccataaatgtttttgtgttttatatatatatataaaaaaataaaataaacaaccctaccatccctcccctaATTGTAGTAAACGAATGAACAACAACACTTGGGCTTCTACTTCCATCttatatattttatacatttatacattttacagacacagtatattttacaatagttatcttttgtttgtttttagtcccttccttcagctaccctcccatatatctctgaacaccatccaatattgatttctatttgccatatcttttcCAACTGTGCTGCTGTTCAGAACAGACGTTCTGAaactatacacattttacagacactgtTTATTTTTAGTCCtgcccttcagctccactcaacccctcccatctatctctgaacatcatccagttttgatttctatttgccagaCCAAAGGTCAGATTTCCACctgtttaatgtccattgctcgtgttacttggtccaagcaagtctcttcttattattgttgtcctgattcatgcagtctcctctgaacagttgatgttgagatgtgtctgttgcttgaactctgaag

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951983.1 False 2343 mRNA 0.43 3 15775465 15795679
XM_021570979.2 True 2536 mRNA 0.42 2 15775466 15783501

Neighbor

gene id symbol gene type direction distance location
LOC110495642 LOC106574719 coding upstream 25828 15734320 ~ 15749637 (+)
LOC110495640 LOC106599837 coding upstream 44635 15723707 ~ 15730830 (+)
LOC110495639 LOC106575596 coding upstream 52276 15721333 ~ 15723189 (+)
LOC110495637 LOC106575461 coding upstream 100536 15622187 ~ 15674929 (+)
LOC110495451 fbx36 coding upstream 160250 15603978 ~ 15615215 (+)
LOC110495644 LOC106575583 coding downstream 583 15796262 ~ 15801788 (+)
LOC110495646 LOC106575584 coding downstream 8500 15804179 ~ 15808486 (+)
LOC110495647 NA coding downstream 21818 15817497 ~ 15820461 (+)
LOC110495648 LOC106575580 coding downstream 30169 15825848 ~ 15841645 (+)
LOC110495650 LOC106575578 coding downstream 51689 15847368 ~ 15852257 (+)
G1520560 NA non-coding upstream 143380 15577484 ~ 15632085 (+)
G1520565 NA non-coding upstream 168647 15590725 ~ 15606818 (+)
LOC110495448 LOC106575529 non-coding upstream 213151 15554859 ~ 15563239 (+)
G1520677 NA non-coding downstream 29048 15824727 ~ 15825140 (+)
G1520691 NA non-coding downstream 74055 15869734 ~ 15870666 (+)
G1520697 NA non-coding downstream 80472 15876151 ~ 15878418 (+)
G1520704 LOC106595378 non-coding downstream 90663 15886342 ~ 15893668 (+)
G1520705 NA non-coding downstream 91506 15887185 ~ 15887551 (+)
LOC110495440 LOC106575601 other upstream 559221 15207355 ~ 15251952 (+)
il8r il8r other upstream 875293 14898154 ~ 14901354 (+)
G1519733 NA other upstream 960579 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 1218119 14556326 ~ 14558589 (+)
G1519538 NA other upstream 1276328 14498786 ~ 14499137 (+)
G1520742 NA other downstream 123478 15919157 ~ 15922899 (+)
G1520748 NA other downstream 142551 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 669834 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1828137 17623786 ~ 17631132 (+)

Expression


Co-expression Network