LOC110495650 (LOC106575578)


Basic Information

Item Value
gene id LOC110495650
gene name LOC106575578
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15847368 ~ 15852257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570990.2
TTCAATTTGTGTTATATAATGTATCCACATGTTAGCGCATGGTGCATGATGATTTTGAAAACTAGTTTTAAGTTGTCTACTGTGGTCTTGAAAAGTACTCTTATCCTCAATATCTGTATATGAGCTGAAAGGGAAATTATTACTCAAAACTCATTATGGGAAGAATGAACTACCACAAGTCTCCTTTTCCTTTTTTTTAATGGGATTGCTGCTGTTTCCCAATGTTCTTGAACTTGGGATTCCATTTGAACTGTTTGCGTTAATATCAGAGAGTATACGCCCCTTATCATCTTTATTGCTGCtgctgaatacttattgaccaGTGAGTCTTTCCTTCCCTCAAATCACTTTCTGAGTCTCCAGACCTCCACCTGTTCACCATACAGGATGTTGACGTTTACGTTGTTGCTGCTGGCTTTGTCAAGTTTACATGCTGCCCCACTGAGGGATCATGTAGTGGCATCCCCTAGAGGTAGGCTTCAGGATCGCAAGGTCCTGGTTCTTCCCCGGAGCGTCCCAGTGGAGGAGCGCAGACAGGGAACAGAGCCCTCCAGACGCTTCCTCATGGACCTGAACACCGGCCTCGTCAAGGAACACATTAGTGAGATGGACAGGAGAGTGGCACCAGtGTACACTCCTTCCTCTGTGGATGAGTACAGACAGGGGACCAAGAACTCCCAGAAGACTCTAGTGGACATCAGGAGCGGACGCATCACCAGGCctgttggagagatggagagaagcatGAAACAGATACTTcaggatgagagagacagattccaAAaTGTGAGGCTGGTCGAGGCTGAGGTCCGGAGCATCCCAGTAGAGGAACGTAGACAGGGAACAGAGCCCTCCAGACGCTTCATCATGGACCTGAACACCGGCCTAGTCAAGGAACATGTCAGTGAGATGGACAGGAGAGTGGCACCAGtgtacACTCCTTCCTCTGTGGATGAGTTCAGACAGGGAACAGAGAACTCCCAGAAAACTCTGATTGACATCAGGAGCGGACGCATCATCAGGCctgttggagagatggagagaagcatGAAACTGACACCTCAGGaTGACAGGCTGGTGGGTGCTAAGGCTGAGACTCACtcagagaaagagtgtgttggtGTGGTCATCGATGGCCACTGCTATCAGTTCAACCCCACACTAATGACCTTCAGTGAGGCAGAGtCCTCCTGCAGCATTCTCTCCCCTCACGGACACCTGGCCTCCGTAACCAACGGCGACCTGCACTCCCGCCTGGTCTCCATGGTGATCAGGGCCACCAAGAGTCCCGTCCTCACCTGGCTGGGTGGAGTCGTGAAGGATAAGCAGTCAGAGTGGACCGATGGGTCCTCCTGGGGCTACAGTGATTGGATGCCCGGtcacccagacacacagacagacaagcaggctTGTCTGGAGATGTTCAGAATTGATGAAAGCTGGTGGACAGCAGTGGACTGTGAACTGAAGAGAGCTTCCATCTGCTCCTTCCCCATGGCAGCATAAGAGGCCTGCACTAACTGTAGAATTAGAATAAGTAGAATGGACATTACAATTCACTATGAAAGGGACTTGTCACTTGAtggcaagttgcaacatgaagtGTTCTATTGAAGTGTTCTATTCTGTCACCATCTTGAGTGACTTAAAAAACACatggatttttaaaaaatatatccaTTCTACACATTCTGTTTCCATGCAGTAATCATGTGAACCATAAAACATCTGCATCCTGTTTGTATTAAGTAGTATGTCCTCCCTTCTTAAAATAAAAACGGAGCATTTTA
>XM_021570988.2
TCAATTTGTGTTATATAATGTATCCACATGTTAGCGCATGGTGCATGATGATTTTGAAAACTAGTTTTAAGTTGTCTACTGTGGTCTTGAAAAGTACTCTTATCCTCAATATCTGTATATGAGCTGAAAGGGAAATTATTACTCAAAACTCATTATGGGAAGAATGAACTACCACAAGTCTCCTTTTCCTTTTTTTTAATGGGATTGCTGCTGTTTCCCAATGTTCTTGAACTTGGGATTCCATTTGAACTGTTTGCGTTAATATCAGAGAGTATACGCCCCTTATCATCTTTATTGCTGCtgctgaatacttattgaccaGTGAGTCTTTCCTTCCCTCAAATCACTTTCTGAGTCTCCAGACCTCCACCTGTTCACCATACAGGATGTTGACGTTTACGTTGTTGCTGCTGGCTTTGTCAAGTTTACATGCTGCCCCACTGAGGGATCATGTAGTGGCATCCCCTAGAGGTAGGCTTCAGGATCGCAAGGTCCTGGTTCTTCCCCGGAGCGTCCCAGTGGAGGAGCGCAGACAGGGAACAGAGCCCTCCAGACGCTTCCTCATGGACCTGAACACCGGCCTCGTCAAGGAACATATCAACGAGATGGACAGGAGAGTGGCACCAGtgtacGTTCCTCCCTCTGTGGATGAGTTCAGACAGGGAACCGAGAACTCCCAGAAGACTCTGGTGGACATCAGGAGCGGACGCATCATCAAACCTgtcggagagatggagagaagcatGATAATGACTCCTCaggAGCCTATGGaggtcccagtcccagtccagaggagagtgggaggatgGGTGAGGGCTGATGTTTTGCCCTGGAGCGTCCCAGTGGAGGAGCGCAGACAGGGAACAGAGCCCTCCAGACGCTTCCTCATGGACCTGAACACCGGCCTCGTCAAGGAACACATTAGTGAGATGGACAGGAGAGTGGCACCAGtgtacACTCCTTCCTCTGTGGATGAGTTCAGACAGGGAACAGAGAACTCCCAGAAAACTCTGATTGACATCAGGAGCGGACGCATCATCAGGCctgttggagagatggagagaagcatGAAACTGACACCTCAGGaTGACAGGCTGGTGGGTGCTAAGGCTGAGACTCACtcagagaaagagtgtgttggtGTGGTCATCGATGGCCACTGCTATCAGTTCAACCCCACACTAATGACCTTCAGTGAGGCAGAGtCCTCCTGCAGCATTCTCTCCCCTCACGGACACCTGGCCTCCGTAACCAACGGCGACCTGCACTCCCGCCTGGTCTCCATGGTGATCAGGGCCACCAAGAGTCCCGTCCTCACCTGGCTGGGTGGAGTCGTGAAGGATAAGCAGTCAGAGTGGACCGATGGGTCCTCCTGGGGCTACAGTGATTGGATGCCCGGtcacccagacacacagacagacaagcaggctTGTCTGGAGATGTTCAGAATTGATGAAAGCTGGTGGACAGCAGTGGACTGTGAACTGAAGAGAGCTTCCATCTGCTCCTTCCCCATGGCAGCATAAGAGGCCTGCACTAACTGTAGAATTAGAATAAGTAGAATGGACATTACAATTCACTATGAAAGGGACTTGTCACTTGAtggcaagttgcaacatgaagtGTTCTATTGAAGTGTTCTATTCTGTCACCATCTTGAGTGACTTAAAAAACACatggatttttaaaaaatatatccaTTCTACACATTCTGTTTCCATGCAGTAATCATGTGAACCATAAAACATCTGCATCCTGTTTGTATTAAGTAGTATGTCCTCCCTTCTTAAAATAAAAACGGAGCATTTTA
>XM_021570989.2
TCAATTTGTGTTATATAATGTATCCACATGTTAGCGCATGGTGCATGATGATTTTGAAAACTAGTTTTAAGTTGTCTACTGTGGTCTTGAAAAGTACTCTTATCCTCAATATCTGTATATGAGCTGAAAGGGAAATTATTACTCAAAACTCATTATGGGAAGAATGAACTACCACAAGTCTCCTTTTCCTTTTTTTTAATGGGATTGCTGCTGTTTCCCAATGTTCTTGAACTTGGGATTCCATTTGAACTGTTTGCGTTAATATCAGAGAGTATACGCCCCTTATCATCTTTATTGCTGCtgctgaatacttattgaccaGTGAGTCTTTCCTTCCCTCAAATCACTTTCTGAGTCTCCAGACCTCCACCTGTTCACCATACAGGATGTTGACGTTTACGTTGTTGCTGCTGGCTTTGTCAAGTTTACATGCTGCCCCACTGAGGGATCATGTAGTGGCATCCCCTAGAGGTAGGCTTCAGGATCGCAAGGTCCTGGTTCTTCCCCGGAGCGTCCCAGTGGAGGAGCGCAGACAGGGAACAGAGCCCTCCAGACGCTTCCTCATGGACCTGAACACCGGCCTCGTCAAGGAACATATCAACGAGATGGACAGGAGAGTGGCACCAGtGTACACTCCTTCCTCTGTGGATGAGTACAGACAGGGGACCAAGAACTCCCAGAAGACTCTAGTGGACATCAGGAGCGGACGCATCACCAGGCctgttggagagatggagagaagcatGAAACAGATACTTcaggatgagagagacagattccaAAaTGTGAGGCTGGTCGAGGCTGAGGTCCGGAGCATCCCAGTAGAGGAACGTAGACAGGGAACAGAGCCCTCCAGACGCTTCATCATGGACCTGAACACCGGCCTAGTCAAGGAACATGTCAGTGAGATGGACAGGAGAGTGGCACCAGtgtacACTCCTTCCTCTGTGGATGAGTTCAGACAGGGAACAGAGAACTCCCAGAAAACTCTGATTGACATCAGGAGCGGACGCATCATCAGGCctgttggagagatggagagaagcatGAAACTGACACCTCAGGaTGACAGGCTGGTGGGTGCTAAGGCTGAGACTCACtcagagaaagagtgtgttggtGTGGTCATCGATGGCCACTGCTATCAGTTCAACCCCACACTAATGACCTTCAGTGAGGCAGAGtCCTCCTGCAGCATTCTCTCCCCTCACGGACACCTGGCCTCCGTAACCAACGGCGACCTGCACTCCCGCCTGGTCTCCATGGTGATCAGGGCCACCAAGAGTCCCGTCCTCACCTGGCTGGGTGGAGTCGTGAAGGATAAGCAGTCAGAGTGGACCGATGGGTCCTCCTGGGGCTACAGTGATTGGATGCCCGGtcacccagacacacagacagacaagcaggctTGTCTGGAGATGTTCAGAATTGATGAAAGCTGGTGGACAGCAGTGGACTGTGAACTGAAGAGAGCTTCCATCTGCTCCTTCCCCATGGCAGCATAAGAGGCCTGCACTAACTGTAGAATTAGAATAAGTAGAATGGACATTACAATTCACTATGAAAGGGACTTGTCACTTGAtggcaagttgcaacatgaagtGTTCTATTGAAGTGTTCTATTCTGTCACCATCTTGAGTGACTTAAAAAACACatggatttttaaaaaatatatccaTTCTACACATTCTGTTTCCATGCAGTAATCATGTGAACCATAAAACATCTGCATCCTGTTTGTATTAAGTAGTATGTCCTCCCTTCTTAAAATAAAAACGGAGCATTTTA
>XM_021570987.2
AATTTGTGTTATATAATGTATCCACATGTTAGCGCATGGTGCATGATGATTTTGAAAACTAGTTTTAAGTTGTCTACTGTGGTCTTGAAAAGTACTCTTATCCTCAATATCTGTATATGAGCTGAAAGGGAAATTATTACTCAAAACTCATTATGGGAAGAATGAACTACCACAAGTCTCCTTTTCCTTTTTTTTAATGGGATTGCTGCTGTTTCCCAATGTTCTTGAACTTGGGATTCCATTTGAACTGTTTGCGTTAATATCAGAGAGTATACGCCCCTTATCATCTTTATTGCTGCtgctgaatacttattgaccaGTGAGTCTTTCCTTCCCTCAAATCACTTTCTGAGTCTCCAGACCTCCACCTGTTCACCATACAGGATGTTGACGTTTACGTTGTTGCTGCTGGCTTTGTCAAGTTTACATGCTGCCCCACTGAGGGATCATGTAGTGGCATCCCCTAGAGGTAGGCTTCAGGATCGCAAGGTCCTGGTTCTTCCCCGGAGCGTCCCAGTGGAGGAGCGCAGACAGGGAACAGAGCCCTCCAGACGCTTCCTCATGGACCTGAACACCGGCCTCGTCAAGGAACATATCAACGAGATGGACAGGAGAGTGGCACCAGtgtacGTTCCTCCCTCTGTGGATGAGTTCAGACAGGGAACCGAGAACTCCCAGAAGACTCTGGTGGACATCAGGAGCGGACGCATCATCAAACCTgtcggagagatggagagaagcatGATAATGACTCCTCaggAGCCTATGGaggtcccagtcccagtccagaggagagtgggaggatgGGTGAGGGCTGATGTTTTGCCCTGGAGCGTCCCAGTGGAGGAGCGCAGACAGGGAACAGAGCCCTCCAGACGCTTCCTCATGGACCTGAACACCGGCCTCGTCAAGGAACACATTAGTGAGATGGACAGGAGAGTGGCACCAGtGTACACTCCTTCCTCTGTGGATGAGTACAGACAGGGGACCAAGAACTCCCAGAAGACTCTAGTGGACATCAGGAGCGGACGCATCACCAGGCctgttggagagatggagagaagcatGAAACAGATACTTcaggatgagagagacagattccaAAaTGTGAGGCTGGTCGAGGCTGAGGTCCGGAGCATCCCAGTAGAGGAACGTAGACAGGGAACAGAGCCCTCCAGACGCTTCATCATGGACCTGAACACCGGCCTAGTCAAGGAACATGTCAGTGAGATGGACAGGAGAGTGGCACCAGtgtacACTCCTTCCTCTGTGGATGAGTTCAGACAGGGAACAGAGAACTCCCAGAAAACTCTGATTGACATCAGGAGCGGACGCATCATCAGGCctgttggagagatggagagaagcatGAAACTGACACCTCAGGaTGACAGGCTGGTGGGTGCTAAGGCTGAGACTCACtcagagaaagagtgtgttggtGTGGTCATCGATGGCCACTGCTATCAGTTCAACCCCACACTAATGACCTTCAGTGAGGCAGAGtCCTCCTGCAGCATTCTCTCCCCTCACGGACACCTGGCCTCCGTAACCAACGGCGACCTGCACTCCCGCCTGGTCTCCATGGTGATCAGGGCCACCAAGAGTCCCGTCCTCACCTGGCTGGGTGGAGTCGTGAAGGATAAGCAGTCAGAGTGGACCGATGGGTCCTCCTGGGGCTACAGTGATTGGATGCCCGGtcacccagacacacagacagacaagcaggctTGTCTGGAGATGTTCAGAATTGATGAAAGCTGGTGGACAGCAGTGGACTGTGAACTGAAGAGAGCTTCCATCTGCTCCTTCCCCATGGCAGCATAAGAGGCCTGCACTAACTGTAGAATTAGAATAAGTAGAATGGACATTACAATTCACTATGAAAGGGACTTGTCACTTGAtggcaagttgcaacatgaagtGTTCTATTGAAGTGTTCTATTCTGTCACCATCTTGAGTGACTTAAAAAACACatggatttttaaaaaatatatccaTTCTACACATTCTGTTTCCATGCAGTAATCATGTGAACCATAAAACATCTGCATCCTGTTTGTATTAAGTAGTATGTCCTCCCTTCTTAAAATAAAAACGGAGCATTTTA

Function

NR:

description
uncharacterized protein LOC110527323 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570990.2 False 1790 mRNA 0.48 11 15847368 15852257
XM_021570988.2 False 1810 mRNA 0.48 10 15847369 15852257
XM_021570989.2 False 1789 mRNA 0.48 10 15847369 15852257
XM_021570987.2 True 2111 mRNA 0.49 12 15847371 15852257

Neighbor

gene id symbol gene type direction distance location
LOC110495648 LOC106575580 coding upstream 5723 15825848 ~ 15841645 (+)
LOC110495647 NA coding upstream 26907 15817497 ~ 15820461 (+)
LOC110495646 LOC106575584 coding upstream 38882 15804179 ~ 15808486 (+)
LOC110495644 LOC106575583 coding upstream 45580 15796262 ~ 15801788 (+)
LOC110495643 LOC106575583 coding upstream 51689 15775465 ~ 15795679 (+)
LOC110495649 LOC106574731 coding downstream 387 15852644 ~ 15865039 (+)
LOC110495654 LOC106575575 coding downstream 141356 15993613 ~ 15996859 (+)
LOC110495655 LOC106574721 coding downstream 157518 16009775 ~ 16021896 (+)
LOC110495658 LOC100136184 coding downstream 194888 16047145 ~ 16060945 (+)
LOC110495657 LOC100380633 coding downstream 223735 16075992 ~ 16089889 (+)
G1520677 NA non-coding upstream 22228 15824727 ~ 15825140 (+)
LOC110495637 LOC106575461 non-coding upstream 172706 15622187 ~ 15674929 (+)
G1520560 NA non-coding upstream 215283 15577484 ~ 15632085 (+)
G1520691 NA non-coding downstream 17477 15869734 ~ 15870666 (+)
G1520697 NA non-coding downstream 23894 15876151 ~ 15878418 (+)
G1520704 LOC106595378 non-coding downstream 34085 15886342 ~ 15893668 (+)
G1520705 NA non-coding downstream 34928 15887185 ~ 15887551 (+)
G1520737 NA non-coding downstream 49984 15902241 ~ 15906967 (+)
G1520649 NA other upstream 31363 15756493 ~ 15816005 (+)
LOC110495440 LOC106575601 other upstream 631124 15207355 ~ 15251952 (+)
il8r il8r other upstream 947196 14898154 ~ 14901354 (+)
G1519733 NA other upstream 1032482 14813982 ~ 14814886 (+)
G1520742 NA other downstream 66900 15919157 ~ 15922899 (+)
G1520748 NA other downstream 85973 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 613256 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1771559 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1913962 17766219 ~ 17766694 (+)

Expression


Co-expression Network