LOC110495655 (LOC106574721)


Basic Information

Item Value
gene id LOC110495655
gene name LOC106574721
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16009775 ~ 16021896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951997.1
TCAGCTGTTTTTCGTCCCCTTGACGTCATCTCCTTTAGTCGATGTGCCACCAGCTTTATACCAGTACTTTCAGTTTTTATTGTAATATGCGTTTTGAATATAATTTACTGAGAAATATTTGGCCATAAAACAACATAGCTACATTAGTTATTTAACTTTTGCTCATTAATTAATGACGAATCTAAGGAGCTTGCGATGAGATAGTAGCTAAGcgcttctgctagctagctagctgaaagCTAACGGAGGACCACAGTATATTTAGCCACAGTGACTGCTAGGTCCGAACTGCAAGTTGAAACAACTAACCTGGCGCGACTAGAACAAGTACAAGATGCAGAAATCAGAGAAGAGCGATGGTGCTGAGGCAACGGTCGACGTGCAGTTTACCGACCTACCCAACGCCCTTATCGCATGCAAAGTAACTGAAGATGTTTTCAATGACCAAACTCTGAAGgCCAGTTTTGAGTCTCTGTTCCGCTCCTTCGACCCGGACGTGAACTTCCAGTTCTTTAAGAGTTTCCGGCGTGTGAGAATCAACTTCAGCGATGCACTGGCTGCCGCTGAGGCGCGGCTCCGACTGCACAAGAGCGACTTCAACGGCAAAGAGATGCGCCTTTACTTCGCACAGTCCGTCCTCATAGGCAGTCCCCGCCTGGAGCCCCCTAAACCTGACAAACAGTTCCTGATCTCCCCCCCAGCTTCGCCACCAGTGGGGTGGCAGCAGGCCCCAGACGCCGTGCCCGTCATCAACTATGACCTTCTCTGTGCCATCTCCAAACTAGGGccagGTGAGAAGTACGAGCTGCACACCggcacccccaccacccccagcGTAGTGGTCCACGTGTGTGAGAACGAGCAGGACAGCTCGGGGGGCGAAGACGACACAGAAGGAAGCACCAGCAGCAGCAACCGCCCCCCTCGCCCCAAAATCATCCAGACACGGCGTCCGGACATCACCCCCGGCGTCATGCAGTGAGCAGCAGAGAGAAGGGGCGCTCTAACATCCACAAAGCATGTCTCCCACATCTGCCTCTCAGAAGTCAATGACAACCTGGccctgggaggatgctgttgggACATGTAATACATCCTCTCTAACACTAGGGGGAGTCACCTCTCAAAGCCCTGCCTtttcatggagagagagagagaaaggaaaagagagcgagagacattcATCTCTTATCATTTCACTTTTAATTTCTCTTTCGTCCTCCATTTGGAACAATATTAGACacttgagagaaagagaagtagaCAGAGAATAAAGAGCAAGGGATGTTTTGAATATTTTTGctgtaaaaaaaactgttttacttcATTTGCTTTGTAACCGTTGTATATGTTCATGGTCAGGCatggtagtgagagagagatgttgtaGTCCTCTCTAGAGAGACACCGGGGGATCAACTTTCTTTGGATTCATTGTGACTTGTAATTCAGGACCCGTAACAAACCCTGTCTATAGACTCATTTCATACTGTGTACTGGATCCATCCTTTTCTTGTCTATAAGATGTGTGCGCATGCTGCAGTGGAGGCCGGCTCGTAATAATGGCTGAAAGGGCGCTAATGGAATGGCgtcaaactatgtgtttgataccattccacctattgcgctccagtcattaccacgagcccgtcctcccaatTAAGGTGCCTCCAACCTCCTGTGGAATGCTGCCATCACTAGCTCAGCGATTTACAATGTTTCACTCATCGAGGAGTACAAATTACATTCTatttgatgacatcacaatagacCTAATTATTATTCATGAATAATTCCTAATGGTCTTTACTCCAGGCCTAACATTTGTAAGCAGAACACTTCAAAGTTGCTTTCTTAGCAAATGAACCTGTCAAGGAGTGAATTCTATGAAAGGGACTTGTTCAATAATATGTCTCCACTAATGACTCCTCTGCTTCCATAGCGTTGAGATGTTACTGTATGTAAATACAAGCTCCCCTCCTAGTTCGTCCTCCTTTGATTGACAGAAATGGCTGCCATATCACGCTGATCACATGGGGCAGGGATGGCCTCCTGCATGGGTCTTCATAACTTACTGTACATCTTCCTGGCCAGTATGGCTGGTCTCACTTGACTTTACACGGCTATTTTGGGGCCGACTGGGGGCCATTAGGGCTCTGAACTGCAGTTACTGTAGGAGGGTTGGTTGTGTGCGCTgctatcagagagagaggggggggggggttcataggTTGTAGTGGGAGGCTTGTGTAGATGcactgtgaaatgtttaatgcATGCGCCATCACAGCACATCTGGAATGAAGTTATCCACCCCAGCAGTTTAGTTGCATTAGTCATTTAGCTACTTTTGTACTCGAACTATTGACATTCATTATAATAAGCTAGTGAGTTATCATGTAATAAAGACTTCACCGCTAAAGTCA
>XM_036951998.1
AGTTGTGACTCTCATATAAGTGGCTGCAGAGAGAGCTAGAGACCAGACAGAAGGCTGTATTATATGAGACTTTTACAAATGCAGCCCATAGTCTCGTTGGAATGTTCTACAGCCTAGACGGAGGACTGTTTTCAGCTGTCGTGTAGctgcctgtctctgtcctacAGACATCACTGCCAAGGGTGGAACCTGAGAGCTAACTCTGGATCTGGGCTAGCTGCTCAGTAGCTAACTGGTTCCGGCTTGAACGTCACTGGACATTTTGGCTCTTCATTTGTCCAGGACTGCAGGCTTTTACAGCTCTCTTAGAGGGGTGTGGACtgtacaaacagagagagagaagaggaggaagtaaGGGAAACGGGAAAAATAAGggttatttttgttttttgtgGGAACGAGATCTCCCTCAACCCTCACGCTGGGGAAGGCGGCGCAACCCCCCCACACCTGTCATCTTCATCCCGGCCCCTCCTCACAAACTCTGACCTCCCGCATTATCAGGTGGAAAGGCCTCTGCCTCCCTGCCCTTCCCATCATGCACCTCAAGACCACCAAGTGTAACGCCTTCTGCCTGGTTGCCTCGGTGACCAACCAGGAAGTGTTTGACAGGCCTGAGTCCCGGgCCAGTTTTGAGTCTCTGTTCCGCTCCTTCGACCCGGACGTGAACTTCCAGTTCTTTAAGAGTTTCCGGCGTGTGAGAATCAACTTCAGCGATGCACTGGCTGCCGCTGAGGCGCGGCTCCGACTGCACAAGAGCGACTTCAACGGCAAAGAGATGCGCCTTTACTTCGCACAGTCCGTCCTCATAGGCAGTCCCCGCCTGGAGCCCCCTAAACCTGACAAACAGTTCCTGATCTCCCCCCCAGCTTCGCCACCAGTGGGGTGGCAGCAGGCCCCAGACGCCGTGCCCGTCATCAACTATGACCTTCTCTGTGCCATCTCCAAACTAGGGccagGTGAGAAGTACGAGCTGCACACCggcacccccaccacccccagcGTAGTGGTCCACGTGTGTGAGAACGAGCAGGACAGCTCGGGGGGCGAAGACGACACAGAAGGAAGCACCAGCAGCAGCAACCGCCCCCCTCGCCCCAAAATCATCCAGACACGGCGTCCGGACATCACCCCCGGCGTCATGCAGTGAGCAGCAGAGAGAAGGGGCGCTCTAACATCCACAAAGCATGTCTCCCACATCTGCCTCTCAGAAGTCAATGACAACCTGGccctgggaggatgctgttgggACATGTAATACATCCTCTCTAACACTAGGGGGAGTCACCTCTCAAAGCCCTGCCTtttcatggagagagagagagaaaggaaaagagagcgagagacattcATCTCTTATCATTTCACTTTTAATTTCTCTTTCGTCCTCCATTTGGAACAATATTAGACacttgagagaaagagaagtagaCAGAGAATAAAGAGCAAGGGATGTTTTGAATATTTTTGctgtaaaaaaaactgttttacttcATTTGCTTTGTAACCGTTGTATATGTTCATGGTCAGGCatggtagtgagagagagatgttgtaGTCCTCTCTAGAGAGACACCGGGGGATCAACTTTCTTTGGATTCATTGTGACTTGTAATTCAGGACCCGTAACAAACCCTGTCTATAGACTCATTTCATACTGTGTACTGGATCCATCCTTTTCTTGTCTATAAGATGTGTGCGCATGCTGCAGTGGAGGCCGGCTCGTAATAATGGCTGAAAGGGCGCTAATGGAATGGCgtcaaactatgtgtttgataccattccacctattgcgctccagtcattaccacgagcccgtcctcccaatTAAGGTGCCTCCAACCTCCTGTGGAATGCTGCCATCACTAGCTCAGCGATTTACAATGTTTCACTCATCGAGGAGTACAAATTACATTCTatttgatgacatcacaatagacCTAATTATTATTCATGAATAATTCCTAATGGTCTTTACTCCAGGCCTAACATTTGTAAGCAGAACACTTCAAAGTTGCTTTCTTAGCAAATGAACCTGTCAAGGAGTGAATTCTATGAAAGGGACTTGTTCAATAATATGTCTCCACTAATGACTCCTCTGCTTCCATAGCGTTGAGATGTTACTGTATGTAAATACAAGCTCCCCTCCTAGTTCGTCCTCCTTTGATTGACAGAAATGGCTGCCATATCACGCTGATCACATGGGGCAGGGATGGCCTCCTGCATGGGTCTTCATAACTTACTGTACATCTTCCTGGCCAGTATGGCTGGTCTCACTTGACTTTACACGGCTATTTTGGGGCCGACTGGGGGCCATTAGGGCTCTGAACTGCAGTTACTGTAGGAGGGTTGGTTGTGTGCGCTgctatcagagagagaggggggggggggttcataggTTGTAGTGGGAGGCTTGTGTAGATGcactgtgaaatgtttaatgcATGCGCCATCACAGCACATCTGGAATGAAGTTATCCACCCCAGCAGTTTAGTTGCATTAGTCATTTAGCTACTTTTGTACTCGAACTATTGACATTCATTATAATAAGCTAGTGAGTTATCATGTAATAAAGACTTCACCGCTAAAGTCA

Function

NR:

description
calcipressin-1-like isoform X2

GO: NA

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951997.1 False 2426 mRNA 0.47 4 16009775 16021896
XM_036951998.1 True 2594 mRNA 0.49 4 16017021 16021896

Neighbor

gene id symbol gene type direction distance location
LOC110495654 LOC106575575 coding upstream 12916 15993613 ~ 15996859 (+)
LOC110495649 LOC106574731 coding upstream 144736 15852644 ~ 15865039 (+)
LOC110495650 LOC106575578 coding upstream 157518 15847368 ~ 15852257 (+)
LOC110495648 LOC106575580 coding upstream 168130 15825848 ~ 15841645 (+)
LOC110495647 NA coding upstream 189314 15817497 ~ 15820461 (+)
LOC110495658 LOC100136184 coding downstream 25249 16047145 ~ 16060945 (+)
LOC110495657 LOC100380633 coding downstream 54096 16075992 ~ 16089889 (+)
LOC110495667 LOC106575562 coding downstream 250340 16272236 ~ 16277918 (+)
LOC110497062 LOC106575548 coding downstream 266985 16288881 ~ 16332222 (+)
LOC110495668 LOC106575499 coding downstream 316429 16338325 ~ 16345761 (+)
G1520776 NA non-coding upstream 400 16009045 ~ 16009375 (+)
G1520767 NA non-coding upstream 31527 15977986 ~ 15978248 (+)
G1520763 NA non-coding upstream 35698 15973828 ~ 15974077 (+)
G1520760 NA non-coding upstream 36894 15971066 ~ 15972881 (+)
G1520780 NA non-coding downstream 2646 16024542 ~ 16024777 (+)
G1520781 NA non-coding downstream 3084 16024980 ~ 16025267 (+)
G1520782 NA non-coding downstream 3620 16025516 ~ 16025715 (+)
G1520787 NA non-coding downstream 10257 16032153 ~ 16032400 (+)
G1520797 NA non-coding downstream 31195 16053091 ~ 16053397 (+)
G1520748 NA other upstream 70957 15938230 ~ 15938818 (+)
G1520742 NA other upstream 86876 15919157 ~ 15922899 (+)
G1520649 NA other upstream 193770 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 209894 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 793531 15207355 ~ 15251952 (+)
LOC110495674 LOC106575504 other downstream 443617 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1601920 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1744323 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1817773 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1834245 17856141 ~ 17860614 (+)

Expression


Co-expression Network