LOC110495667 (LOC106575562)



Basic Information


Item Value
gene id LOC110495667
gene name LOC106575562
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16272236 ~ 16277918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036952018.1
aggcaacccttgctcggattttgtataccttgttgtcaagagactggacattggcgagtagtatgctcgggagcggtgcgcagGCACATCGCACGGTGCGTGGGCACATCCcaaccagaagaccgctccgtctgccccttctgcggcgccgttgttttgggtcgccggctgggatccgatccattgtcctgggtgatgGACCAAACAGAGGGTCCGcttcaggaaagtcgtattccttaagTACATGTAGTAACAACACAATGGCCTGTACATTACCACTGGCATTCCTTGTCCTTCATGGATTTATCTCTCTTTCGGCAGAAGATTCATGTGATAATTATTTCCAACCTGGAGGTAACTTCTCCATCCCTCTGAAATACACTGACTTGAGTTCGAAAGAAATAACCTGGAAACACAATGGCAGCGTTATATTTAAAAGAAAGAATGGAAAGTTCAAACCAGGCAAGACTGAGGACATCTTAGAGGATGGGTCTCTCCAACTGAATGGCCTGGTGTCGGCAAACGAAGGTACTTATAAAGCAGAAGTGTTCAACATCGACGGGAAAAGCATCAAAGATCAGTCCTTCAGCCTGTGTATGAAGGAAAAGGTCTCCAAGCCCTCAGTGAAATTCACCTGTTCTGATAAGGACGTCACCTTTACCTGTATCTTGACTAACACTGAGGGAGTGACTTTCAAGTGGAGCAAGAACAGACAGCCTTTAAATGGGGAAAAAAAAACAACCTTGATCATCGGTCTGAAACAACTGAAAGAGCTGGACACCTTCACCTGCTCTGTAGTCAATGAGGTCAGCACGGAGACAAGTGACATCATCAAACCAACATGCAAGGCTGTCTCAAAATCGATTGATCGGCGTTTACTGTTTGGTTTTGATTTCTTGACCATGGTGTGCATCCTGGCCGGGGGAGGGGGCTTGgtactcctcctcatcatcatcaccttgGTGTGCTGTTGCCTCAGCCGACGCAAGAGCCAGATGCACTTTGAAGAGGAAAGAGAGTTGAGACTAGCCCCCCTGACCAAGACCCAGCATCCTTACCACTCAGAGGGCCAGACAAAGCATCCTTCTCACCCAGAGGGCCAGAAGCAAAGGCAGAGACCCCCCGGTGGGGCCCCACCTGGTTCCACCGGCCCCAGGCCCACGGCCAGAGCCTCCAACCAGGCAGAGCCCCAACCCAGAGCCCAGGCTCAAGGGAGGCCTCCACAGACACCACTCGATGACGATGAAGAGCATCCCCCACCACTACCCCAGCCCAGGAAGAAAGGCCCTCACCCCCCCAGACACTGAGTCTGGAAACAGGTTTAGCCTATATACTTTCTGATCCAAGGAAAGGAGTTCCAGCAGTCTACATGTTGAACATTTTTGTTCAATAACATGTTGTTATCTAAAGAATAGAAAAGGAAAGAAAAAACACCCAGACAGTGTTCTATTGTACAAATTAATGTAGATTATTTTTACACTAGTTTTTATATAAATTAAATGTTTTTCTTCCAACGCCTTTTCAAAATTCGGTTTCATTGTTTTTATGTTGAGTTGAGTGTTTATCAAAATCATCCATAGGTTGTAGCCTACCTATCTATCCACCTCCTCTTGAGGTAGTGATCTTAACTTGATGTCTGTGTGGTTGTCAATAAAAAGTAAAGAATTA
>XM_036952020.1
gctcggattttgtataccttgttgtcaagagactggacattggcgagtagtatgctcgggagcggtgcgcagGCACATCGCACGGTGCGTGGGCACATCCcaaccagaagaccgctccgtctgccccttctgcggcgccgttgttttgggtcgccggctgggatccgatccattgtcctgggtgatgGACCAAACAGAGGGTCCGcttcaggaaagtcgtattccttaaggttgTACATGTAGTAACAACACAATGGCCTGTACATTACCACTGGCATTCCTTGTCCTTCATGGATTTATCTCTCTTTCGGCAGAAGATTCATGTGATAATTATTTCCAACCTGGAGGTAACTTCTCCATCCCTCTGAAATACACTGACTTGAGTTCGAAAGAAATAACCTGGAAACACAATGGCAGCGTTATATTTAAAAGAAAGAATGGAAAGTTCAAACCAGGCAAGACTGAGGACATCTTAGAGGATGGGTCTCTCCAACTGAATGGCCTGGTGTCGGCAAACGAAGGTACTTATAAAGCAGAAGTGTTCAACATCGACGGGAAAAGCATCAAAGATCAGTCCTTCAGCCTGTGTATGAAGGAAAAGGTCTCCAAGCCCTCAGTGAAATTCACCTGTTCTGATAAGGACGTCACCTTTACCTGTATCTTGACTAACACTGAGGGAGTGACTTTCAAGTGGAGCAAGAACAGACAGCCTTTAAATGGGGAAAAAAAAACAACCTTGATCATCGGTCTGAAACAACTGAAAGAGCTGGACACCTTCACCTGCTCTGTAGTCAATGAGGTCAGCACGGAGACAAGTGACATCATCAAACCAACATGCAAGGCTGTCTCAAAATCGATTGATCGGCGTTTACTGTTTGGTTTTGATTTCTTGACCATGGTGTGCATCCTGGCCGGGGGAGGGGGCTTGgtactcctcctcatcatcatcaccttgGTGTGCTGTTGCCTCAGCCGACGCAAGAGCCAGATGCACTTTGAAGAGGAAAGAGAGTTGAGACTAGCCCCCCTGACCAAGACCCAGCATCCTTACCACTCAGAGGGCCAGACAAAGCATCCTTCTCACCCAGAGGGCCAGAAGCAAAGGCAGAGACCCCCCGGTGGGGCCCCACCTGGTTCCACCGGCCCCAGGCCCACGGCCAGAGCCTCCAACCAGGCAGAGCCCCAACCCAGAGCCCAGGCTCAAGGGAGGCCTCCACAGACACCACTCGATGACGATGAAGAGCATCCCCCACCACTACCCCAGCCCAGGAAGAAAGGCCCTCACCCCCCCAGACACTGAGTCTGGAAACAGGTTTAGCCTATATACTTTCTGATCCAAGGAAAGGAGTTCCAGCAGTCTACATGTTGAACATTTTTGTTCAATAACATGTTGTTATCTAAAGAATAGAAAAGGAAAGAAAAAACACCCAGACAGTGTTCTATTGTACAAATTAATGTAGATTATTTTTACACTAGTTTTTATATAAATTAAATGTTTTTCTTCCAACGCCTTTTCAAAATTCGGTTTCATTGTTTTTATGTTGAGTTGAGTGTTTATCAAAATCATCCATAGGTTGTAGCCTACCTATCTATCCACCTCCTCTTGAGGTAGTGATCTTAACTTGATGTCTGTGTGGTTGTCAATAAAAAGTAAAGAATTA
>XM_036952019.1
acaccgctaactaagctagccgtttcacatccgttacataaggTGAGGAAACCGTCCATGTAAGGTGAGGAAACTGTCCATGTAAGTACATGTAGTAACAACACAATGGCCTGTACATTACCACTGGCATTCCTTGTCCTTCATGGATTTATCTCTCTTTCGGCAGAAGATTCATGTGATAATTATTTCCAACCTGGAGGTAACTTCTCCATCCCTCTGAAATACACTGACTTGAGTTCGAAAGAAATAACCTGGAAACACAATGGCAGCGTTATATTTAAAAGAAAGAATGGAAAGTTCAAACCAGGCAAGACTGAGGACATCTTAGAGGATGGGTCTCTCCAACTGAATGGCCTGGTGTCGGCAAACGAAGGTACTTATAAAGCAGAAGTGTTCAACATCGACGGGAAAAGCATCAAAGATCAGTCCTTCAGCCTGTGTATGAAGGAAAAGGTCTCCAAGCCCTCAGTGAAATTCACCTGTTCTGATAAGGACGTCACCTTTACCTGTATCTTGACTAACACTGAGGGAGTGACTTTCAAGTGGAGCAAGAACAGACAGCCTTTAAATGGGGAAAAAAAAACAACCTTGATCATCGGTCTGAAACAACTGAAAGAGCTGGACACCTTCACCTGCTCTGTAGTCAATGAGGTCAGCACGGAGACAAGTGACATCATCAAACCAACATGCAAGGCTGTCTCAAAATCGATTGATCGGCGTTTACTGTTTGGTTTTGATTTCTTGACCATGGTGTGCATCCTGGCCGGGGGAGGGGGCTTGgtactcctcctcatcatcatcaccttgGTGTGCTGTTGCCTCAGCCGACGCAAGAGCCAGATGCACTTTGAAGAGGAAAGAGAGTTGAGACTAGCCCCCCTGACCAAGACCCAGCATCCTTACCACTCAGAGGGCCAGACAAAGCATCCTTCTCACCCAGAGGGCCAGAAGCAAAGGCAGAGACCCCCCGGTGGGGCCCCACCTGGTTCCACCGGCCCCAGGCCCACGGCCAGAGCCTCCAACCAGGCAGAGCCCCAACCCAGAGCCCAGGCTCAAGGGAGGCCTCCACAGACACCACTCGATGACGATGAAGAGCATCCCCCACCACTACCCCAGCCCAGGAAGAAAGGCCCTCACCCCCCCAGACACTGAGTCTGGAAACAGGTTTAGCCTATATACTTTCTGATCCAAGGAAAGGAGTTCCAGCAGTCTACATGTTGAACATTTTTGTTCAATAACATGTTGTTATCTAAAGAATAGAAAAGGAAAGAAAAAACACCCAGACAGTGTTCTATTGTACAAATTAATGTAGATTATTTTTACACTAGTTTTTATATAAATTAAATGTTTTTCTTCCAACGCCTTTTCAAAATTCGGTTTCATTGTTTTTATGTTGAGTTGAGTGTTTATCAAAATCATCCATAGGTTGTAGCCTACCTATCTATCCACCTCCTCTTGAGGTAGTGATCTTAACTTGATGTCTGTGTGGTTGTCAATAAAAAGTAAAGAATTA
>XM_036952021.1
cgttacataaggTGAGGAAACCGTCCATGTAAGTACATGTAGTAACAACACAATGGCCTGTACATTACCACTGGCATTCCTTGTCCTTCATGGATTTATCTCTCTTTCGGCAGAAGATTCATGTGATAATTATTTCCAACCTGGAGGTAACTTCTCCATCCCTCTGAAATACACTGACTTGAGTTCGAAAGAAATAACCTGGAAACACAATGGCAGCGTTATATTTAAAAGAAAGAATGGAAAGTTCAAACCAGGCAAGACTGAGGACATCTTAGAGGATGGGTCTCTCCAACTGAATGGCCTGGTGTCGGCAAACGAAGGTACTTATAAAGCAGAAGTGTTCAACATCGACGGGAAAAGCATCAAAGATCAGTCCTTCAGCCTGTGTATGAAGGAAAAGGTCTCCAAGCCCTCAGTGAAATTCACCTGTTCTGATAAGGACGTCACCTTTACCTGTATCTTGACTAACACTGAGGGAGTGACTTTCAAGTGGAGCAAGAACAGACAGCCTTTAAATGGGGAAAAAAAAACAACCTTGATCATCGGTCTGAAACAACTGAAAGAGCTGGACACCTTCACCTGCTCTGTAGTCAATGAGGTCAGCACGGAGACAAGTGACATCATCAAACCAACATGCAAGGCTGTCTCAAAATCGATTGATCGGCGTTTACTGTTTGGTTTTGATTTCTTGACCATGGTGTGCATCCTGGCCGGGGGAGGGGGCTTGgtactcctcctcatcatcatcaccttgGTGTGCTGTTGCCTCAGCCGACGCAAGAGCCAGATGCACTTTGAAGAGGAAAGAGAGTTGAGACTAGCCCCCCTGACCAAGACCCAGCATCCTTACCACTCAGAGGGCCAGACAAAGCATCCTTCTCACCCAGAGGGCCAGAAGCAAAGGCAGAGACCCCCCGGTGGGGCCCCACCTGGTTCCACCGGCCCCAGGCCCACGGCCAGAGCCTCCAACCAGGCAGAGCCCCAACCCAGAGCCCAGGCTCAAGGGAGGCCTCCACAGACACCACTCGATGACGATGAAGAGCATCCCCCACCACTACCCCAGCCCAGGAAGAAAGGCCCTCACCCCCCCAGACACTGAGTCTGGAAACAGGTTTAGCCTATATACTTTCTGATCCAAGGAAAGGAGTTCCAGCAGTCTACATGTTGAACATTTTTGTTCAATAACATGTTGTTATCTAAAGAATAGAAAAGGAAAGAAAAAACACCCAGACAGTGTTCTATTGTACAAATTAATGTAGATTATTTTTACACTAGTTTTTATATAAATTAAATGTTTTTCTTCCAACGCCTTTTCAAAATTCGGTTTCATTGTTTTTATGTTGAGTTGAGTGTTTATCAAAATCATCCATAGGTTGTAGCCTACCTATCTATCCACCTCCTCTTGAGGTAGTGATCTTAACTTGATGTCTGTGTGGTTGTCAATAAAAAGTAAAGAATTA
>XM_036952022.1
caCCGACAAGGTGTACATTCTCTCGTAGCTTAGGCTAACTAAAACTATCGGTACACTGACTGTTTCAAGTTGACAAACGGCTTTTTGAATTTCAAAAGTGCAGGTGATGCAAGTAACACAAGATGTCAGCATAGTTCTACAATCcatgaaaactgttgttcactGGCTTGGCCTATTCCAATTCAAGCCCAGTCACCGACACCTGGGTACTTCTGGTagacagaggaaaggaaagaTATCAACATCAACACATTCTGCCATGTTGCTTTCATTTGTCTAATCTTTTCAGATGTTCTCTCCAGTAGGTATATAGGGCTCAGTTTGGAATTGTACATGTAGTAACAACACAATGGCCTGTACATTACCACTGGCATTCCTTGTCCTTCATGGATTTATCTCTCTTTCGGCAGAAGATTCATGTGATAATTATTTCCAACCTGGAGGTAACTTCTCCATCCCTCTGAAATACACTGACTTGAGTTCGAAAGAAATAACCTGGAAACACAATGGCAGCGTTATATTTAAAAGAAAGAATGGAAAGTTCAAACCAGGCAAGACTGAGGACATCTTAGAGGATGGGTCTCTCCAACTGAATGGCCTGGTGTCGGCAAACGAAGGTACTTATAAAGCAGAAGTGTTCAACATCGACGGGAAAAGCATCAAAGATCAGTCCTTCAGCCTGTGTATGAAGGAAAAGGTCTCCAAGCCCTCAGTGAAATTCACCTGTTCTGATAAGGACGTCACCTTTACCTGTATCTTGACTAACACTGAGGGAGTGACTTTCAAGTGGAGCAAGAACAGACAGCCTTTAAATGGGGAAAAAAAAACAACCTTGATCATCGGTCTGAAACAACTGAAAGAGCTGGACACCTTCACCTGCTCTGTAGTCAATGAGGTCAGCACGGAGACAAGTGACATCATCAAACCAACATGCAAGGCTGTCTCAAAATCGATTGATCGGCGTTTACTGTTTGGTTTTGATTTCTTGACCATGGTGTGCATCCTGGCCGGGGGAGGGGGCTTGgtactcctcctcatcatcatcaccttgGTGTGCTGTTGCCTCAGCCGACGCAAGAGCCAGATGCACTTTGAAGAGGAAAGAGAGTTGAGACTAGCCCCCCTGACCAAGACCCAGCATCCTTACCACTCAGAGGGCCAGACAAAGCATCCTTCTCACCCAGAGGGCCAGAAGCAAAGGCAGAGACCCCCCGGTGGGGCCCCACCTGGTTCCACCGGCCCCAGGCCCACGGCCAGAGCCTCCAACCAGGCAGAGCCCCAACCCAGAGCCCAGGCTCAAGGGAGGCCTCCACAGACACCACTCGATGACGATGAAGAGCATCCCCCACCACTACCCCAGCCCAGGAAGAAAGGCCCTCACCCCCCCAGACACTGAGTCTGGAAACAGGTTTAGCCTATATACTTTCTGATCCAAGGAAAGGAGTTCCAGCAGTCTACATGTTGAACATTTTTGTTCAATAACATGTTGTTATCTAAAGAATAGAAAAGGAAAGAAAAAACACCCAGACAGTGTTCTATTGTACAAATTAATGTAGATTATTTTTACACTAGTTTTTATATAAATTAAATGTTTTTCTTCCAACGCCTTTTCAAAATTCGGTTTCATTGTTTTTATGTTGAGTTGAGTGTTTATCAAAATCATCCATAGGTTGTAGCCTACCTATCTATCCACCTCCTCTTGAGGTAGTGATCTTAACTTGATGTCTGTGTGGTTGTCAATAAAAAGTAAAGAATTA

Function


NR:

description
T-cell surface antigen CD2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036952018.1 False 1668 mRNA 0.47 6 16272236 16277918
XM_036952020.1 False 1661 mRNA 0.47 6 16272247 16277918
XM_036952019.1 False 1513 mRNA 0.46 6 16272864 16277918
XM_036952021.1 False 1460 mRNA 0.46 6 16272895 16277918
XM_036952022.1 True 1757 mRNA 0.45 6 16273854 16277918

Neighbor


gene id symbol gene type direction distance location
LOC110495657 LOC100380633 coding upstream 182347 16075992 ~ 16089889 (+)
LOC110495658 LOC100136184 coding upstream 211291 16047145 ~ 16060945 (+)
LOC110495655 LOC106574721 coding upstream 250340 16009775 ~ 16021896 (+)
LOC110495654 LOC106575575 coding upstream 275377 15993613 ~ 15996859 (+)
LOC110495649 LOC106574731 coding upstream 407197 15852644 ~ 15865039 (+)
LOC110497062 LOC106575548 coding downstream 10963 16288881 ~ 16332222 (+)
LOC110495668 LOC106575499 coding downstream 60407 16338325 ~ 16345761 (+)
LOC110495670 tgds coding downstream 74915 16352833 ~ 16367882 (+)
gucy1b2 LOC106575503 coding downstream 144327 16422245 ~ 16427538 (+)
LOC110495673 NA coding downstream 150056 16427597 ~ 16431410 (+)
G1520876 NA non-coding upstream 41167 16230577 ~ 16231069 (+)
G1520721 NA non-coding upstream 68634 16157267 ~ 16203602 (+)
G1520736 NA non-coding upstream 80064 16185985 ~ 16192172 (+)
G1520733 NA non-coding upstream 80763 16185213 ~ 16191473 (+)
G1520804 NA non-coding upstream 116000 16155900 ~ 16156236 (+)
G1520964 NA non-coding downstream 134302 16412220 ~ 16412575 (+)
G1520968 NA non-coding downstream 153803 16431721 ~ 16431929 (+)
G1520973 NA non-coding downstream 161041 16438959 ~ 16439393 (+)
G1520748 NA other upstream 333418 15938230 ~ 15938818 (+)
G1520742 NA other upstream 349337 15919157 ~ 15922899 (+)
G1520649 NA other upstream 456231 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 472355 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 1055992 15207355 ~ 15251952 (+)
LOC110495674 LOC106575504 other downstream 187595 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1345898 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1488301 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1561751 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1578223 17856141 ~ 17860614 (+)

Expression



Co-expression Network