LOC110495668 (LOC106575499)


Basic Information

Item Value
gene id LOC110495668
gene name LOC106575499
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16338325 ~ 16345761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110495668
CCTTTTCGTCACCAATTATGCTAAAACGTGAGGCTAGAGCGTGCATCTACGCCATAGGCAAAGATGGGGGGCGTGTTCATAGAAATGGCACTATGCTGTCAAACCAAAATTGGAACGCAACCTGTGAAAAAAGTTGCACCTAATCTACCTGCCTACTAGGAAGGAGCGTGATTGATGCCGCGAGTCCGGTGTTGGAGAGATTAGTCAGAAGGGCTGTTGGAAATGGAGTGTCGATACAGATGAGCTGCTACCTCCAACCTACAGTGTTCCCTGTCAACCCTTAGGGTGCCTTTCTGTGGGAATACCTCACCAAGACCTAAACTGCACCTGACTCGCCTGCAACATCCAAGCATTCAGTGTCTTAGAATCTCTCATAATCAACTGAAAGACTGGTACTTAAATTGAAAGGATACTGATCACTAAAGCAACCATATCACCATATCACTAGCAACCATATCACCATATCACTAGCAACCATATCACCATATCACTAGCAACCATATCACCATATCACTAGCAACCATATCACCATATCACTAGCAACCATATCACCATATCACTAGCAACCATATCACCTAACTCCTCAATAACTGTCTTTAGAAGTATTATCCAAGATGGCTCCCACCACCATGGAGGCGGCGGACATCGTTGTTGTGGTAATGTACTTCATCCTGGTCCTTGCCATTGGCTTCTTCGCCATGATGAAAGCCAATCGGAGCACTGTGAGCGGTTACTTCCTGGCCGGCCGATCAATGAACTGGGCTATGATTGGTGCCTCTCTGTTCGTCAGCAACATTGGCAGCGAGCATTTCATTGGCCTTGCAGGGTCCGGGCGGCCAGCGGGTTCGGAGTCGCCGCATGGGAGTTCAATGCCCTcctgctcctccagctcctgGGCTGGGTGTTCATCCCTGTTTACATCCACTCTGGGGTCTACACAATGCCAGAGTACCTGGCCAAGCGCTTCGGCGGCCGACGGCTCAAGGTCTACttcgctgctctctctctgctgctctacatCTTCACCAAGCTCTCTGTGGACCTGTACTCCGGAGCGCTCTTCATCCAGGAGTCACTGGGCTGGAATCTCTATCTGTCCATCATCCTCCTCATCACCGTGACCGCGTTGCTGACCGTCACAGGGGGCCTAGTTGCAGTCATCTACACCGACACCCTCCAGGCATTCCTGATGATTGGTGGCGCGCTATGCCTAACCGCCATTAGCCTGGTAAAAGTGGGTGGCCTGGAAGGGGTGCGGACCAAGTACATGGAAGCCAGACCGAACATCACAGCAATATTAGCATCCTCCAACTTCACCTACATCCCCTCCTGCCACGTGGAGCCCAAGCCCGACTCCCTGCGCATCCTAAGGGGCCCGCTGGACAAGGACCTCCCCTGGCCGGGCTTCCTCCTTGGCCAGACCCCGGCCTCCATCTGGTACTGGTGTGCCGACCAGGTCATCGTCCAGCGGGTGCTAGCCGCACGGAGCATCTCCCACGCTAAAGGCGCCACACTGATGGCCGGCTTCCTCAAGATCCTGCCCATGTTCATCATCGTCATTCCCGGGATGATCTCCCGCATACTGTTTGCAGATGAGCTGGCGTGTATCAGCCCAGAACACTGCATGGAGGTGTGTGGATCCAGGGCCGGGTGCTCAAACATCGCCTACCCCCGCCTGGTGATGTCCGTCATGCCGGTGGGTCTGCGTGGCCTGATGATGGCGGTGATGATCGCAGCGCTCATGAGCGACCTGGACTCCATCTTCAACTCTGCCAGCACCATCTTCACCTTGGACATTTACAAAATGGCGCGGGAGCGGGCTTCGTCGAGGGAGCTGATGGTGGTGGGACGTGTGTTCGTGGTGTTCATGGTGGTTATCAGCATCGCCTGGGTTCCAGTCATCATCGAGATGCAGGGAGGCCAGATGTTCTACTACATCCAGGAAGTGTCTGACTACCTGACCCCACCCATCGCTGCCCTATTCCTGCTGGGCGTCCTATGGCGGCGCTGCAATGAGACTGGTGCGTTCTGGGGTGGCATAGTGGGGTTCGCGTTGGGCGCCACGAGACTGGTGCTTGCGTTCGTCTACAGAGAGCCCCACTGCGACGAGCCGGACGAGCGGCCGTCTTTTGTCAAGGACGTTCATTTCATGTACGTGGCAGCCGGGCTGTTCTGGATCTCAGGCCTGGTGGCTGTGGTGGTTAGTCTCTGCACCCCTCCACCGAGCATAGAGCAGGTCCGCACCACTACCTTCTGGGGGCTACGCCAAAGAAACACAACCCTAAACatagagagagacgaggagatgaGCAAGCTGAACCCCCAAACTAAGACCCATGTCAATGGGAACGGCTGCATGGACAAGGAGACGACCAAAGACCTCCATAATGGGGTGGAGGCTTTATCCTATATGGAGTCTCCATCTAATCTCCAAAATGGTGGCCACCCGACCTTTTCAAGCACCGGAATGGCGGTAAACCAAGAGAAGCCTTGGGTGGTCTGCTGTGGAGGAGtagaaggggagaaggggaggtgtGTGAGGGTTCTAGAGTGGTTCTGTGGGTTTAAGGAGGAACCGGCTAAGACCCGGCCCAGATCAgctgaggaggaagagagactTTTGCAGGAGATGCTCCAGGAGACCCCCAGAACCAGACTCATCCTCAACATGGGCCTGGTGCTGGTCTGCTCTGTGGGGGTGTTCCTCTTCATCTACTTCTCTCTGTAGGAGGGGATCTCAACCTGTGACATACACAATATAGTTTATATGTAATATGTCTACATGTGACATCTAAAGAAGTGTTTCTTAACTTGTGTTTCCTACACCACCCCAAAAGTTCAAGCCcagtgaatcaggtgtgcttgagCTTGGCTAGAACAAAAATGTCCAACCTTGGTGGTCCTCCAACATGGATTCAGGGGTAGATGTAACATAGCAAACGTAAATCTAGTATGTAatgttacatttcgtatggtaCAGTGCcttaaagtattcacaccgcttgactttttcaaaatgttgttacaaAGTGCGATTAAAATAGatgtaattgtcattttttgtcaacgattTACACTACAtactcatgtcaaagtggaaaaaaATTCGCAACAAAttaaatggaaaataaaacactaatatcttcattagataagtattcaaccccctgagtcaatacgtgTTAGAATTACCTTTGGAAGCAATTAtagctttctgggtaagtctcgaagagctttgcaaacctggattgtataatatttgcccatttattctttcaaaaattcttcaagctctgtcaagttggttgttgatcattgttaaaaagccattttcaagtcaatttttaagtcaaaactgtaactaggccactcaaacATTCAATATCGTCTTgataagtaactccagtgtatatttggccttgcgttttaggctattgtcctgctgaaaggtggatttgtctctgtgtctgttggaaagcagacaaccggGTTTTCCTTTAGGActatgcctgtgcttagctctattccctTTCTTTTAATCCCAAATAAAACTCCCAAGTTCTTGCC
>TU1741287
AGTTGCACCTAATCTACCTGCCTACTAGGAAGGAGCGTGATTGATGCCGCGAGTCCGGTGTTGGAGAGATTAGTCAGAAGGGCTGTTGGAAATGGAGTGTCGATACAGATGAGCTGCTACCTCCAACCTACAGTGTTCCCTGTCAACCCTTAGGGTGCCTTTCTGTGGGAATACCTCACCAAGACCTAAACTGCACCTGACTCGCCTGCAACATCCAAGCATTCAGTGTCTTAGAATCTCTCATAATCAACTGAAAGACTGAAGTATTATCCAAGATGGCTCCCACCACCATGGAGGCGGCGGACATCGTTGTTGTGGTAATGTACTTCATCCTGGTCCTTGCCATTGGCTTCTTCGCCATGATGAAAGCCAATCGGAGCACTGTGAGCGGTTACTTCCTG

Function

NR:

description
sodium/myo-inositol cotransporter-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110495668 False 3567 mRNA 0.50 2 16338325 16345761
TU1741287 True 401 lncRNA 0.50 3 16338456 16342934

Neighbor

gene id symbol gene type direction distance location
LOC110497062 LOC106575548 coding upstream 6103 16288881 ~ 16332222 (+)
LOC110495667 LOC106575562 coding upstream 60407 16272236 ~ 16277918 (+)
LOC110495657 LOC100380633 coding upstream 248436 16075992 ~ 16089889 (+)
LOC110495658 LOC100136184 coding upstream 277380 16047145 ~ 16060945 (+)
LOC110495655 LOC106574721 coding upstream 316429 16009775 ~ 16021896 (+)
LOC110495670 tgds coding downstream 7072 16352833 ~ 16367882 (+)
gucy1b2 LOC106575503 coding downstream 76484 16422245 ~ 16427538 (+)
LOC110495673 NA coding downstream 82213 16427597 ~ 16431410 (+)
LOC110495674 LOC106575504 coding downstream 108357 16454118 ~ 16468453 (+)
LOC110495678 LOC106575507 coding downstream 125343 16471104 ~ 16474100 (+)
G1520876 NA non-coding upstream 107256 16230577 ~ 16231069 (+)
G1520721 NA non-coding upstream 134723 16157267 ~ 16203602 (+)
G1520736 NA non-coding upstream 146153 16185985 ~ 16192172 (+)
G1520733 NA non-coding upstream 146852 16185213 ~ 16191473 (+)
G1520804 NA non-coding upstream 182089 16155900 ~ 16156236 (+)
G1520964 NA non-coding downstream 66459 16412220 ~ 16412575 (+)
G1520968 NA non-coding downstream 85960 16431721 ~ 16431929 (+)
G1520973 NA non-coding downstream 93198 16438959 ~ 16439393 (+)
G1521008 NA non-coding downstream 170345 16516106 ~ 16516354 (+)
G1520748 NA other upstream 399507 15938230 ~ 15938818 (+)
G1520742 NA other upstream 415426 15919157 ~ 15922899 (+)
G1520649 NA other upstream 522320 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 538444 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 1122081 15207355 ~ 15251952 (+)
LOC110527374 LOC106592210 other downstream 1278055 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1420458 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1493908 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1510380 17856141 ~ 17860614 (+)

Expression


Co-expression Network