LOC110495670 (tgds)


Basic Information

Item Value
gene id LOC110495670
gene name tgds
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16352833 ~ 16367882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952029.1
AGGCTGTAAGTGTGAACATTAACGGATACATTGTCTCCTAAAAGCGACTTCTCAAATTATATATAAAGAAGATGATTGTACGACAACAATGAATGGTCTTGTCAAAAAGGGAGAGTGCCTTTGGGCTTCAATGAAAACTGAAGATCCAGGAGAAGAGTTGTGAGGAGACATCAACAGGTTGTGCGAGGATGGACTTTGTCAAAACGGTCCTGGTGACTGGAGGGGCAGGTTTCATTGGGTCCCATTTTGTCTGCTCCCTAGTCAACAGGCACCCAGATTGGCGTATCATcaactttgacaatCTGGACTACTGTTCCAATCTCAGGAACCTGGAGTCTGTAGAGGAGAATGAGAACTACACCTTTATCAGGGGGGATATATGCAATCCATGCTTGTTAAAACACATGTTTGCCACAGAAAACATCGATATCATCTTTCACTTTGCAGCTCAAACACATGTTGAGACGTCCTTCGTATGGCCGTCCAGATACCACATGGTGAACGTGGAGGGGACAAGGGTGCTACTGAAAGAAGCTTTTGAGGCCAAGGTGGAGAAGTTTATTTACATTAGTACAGATGAGGTGTATGGAGAGAGTCTGTATAAGGAATTAGATGAAACCAGCCCAAGAAGACCCAACAACCCATACTCTGTGTCTAAATCAGCTGCTGAGTGTCTTGTATTGTCCTACAGGGAGAGACACAAGTTTCCTGTTATAATAACAAGGAGCAATAATGTATATGGACCCAGACAGTACTTGGAGAAGGTCATTCCAAAATTCGTGTCCTTCCTTCAGCTGAACAAAAAATGTACCATCCAAGGGACCAGCCCTCAATCTCGCCACTTCCTGTACGTGGATGATGCCATTGAAGCATTCCACACCATCCTGGAGAGGGGGACAGTGGGAGAAACCTACAACATCGGGACCGACTTCGAAATATCCATCATTCAACTAGCCAGAGAACTTATCAAGATGGTCAGGCATGTACCTGATGCAGAACTGGACGACTGGCTGGAGTTTGTGCCTGACCGGCCAGTGGTTGACCTGAGGTACCCTGTGAACTGTGAGAAGCTGTGGAGGCTGGGCTGGAAGCCTGCAGTGTCATGGGCAGAGGGCATCAGAAGGACAGTCAAATGGTACCAAGAGAATCCAGACTTCTGGCCAGATGTCAAACCAGAAGACCAACCAATTACCTTTGAGCCCAATACCAGAGACCAATAAGCACATAGATTGTGTTCCTGGAGAGCAACAGGGTGTGCTGGATTTTGTTCCAGACCTGGTTCAATTAATCAGTCTTAATTAGGGTTGTTGACCTCCACTAGTCAGCTCAATCACTGTGGGTGTGCAAGGGAACACttatttttgtaaatgttttactAATGAAGGTCGAATGTAATATTCATCATAGTCAATAAATAACTTTATAACGCAGGCTTGAATGTTGAATATTAAACTCCGGATATGCAAAGACAAAATACAAAAGTTGGTTAACTATTTGCAAGTCAAAACTTTTAATTTTGGTAAAATCATACAATAAATGCACAGGTGTTTTCTCGTGCAGTGCACAGCCTCTAAACTAGTACATAAAGCAAATACAAACTAGTGGGCGACTCAGTGGCATTCAGGAGAGTGTCTGGCCAGCCGAAagctctccaacctctcctctctgcagctTCACATTTCCATTCATACGTTTCATCCAAACCTTTACTTTTCAGACTCAGTCAGTCAATGTTACTGTAAGACTCACCACACACTCCACAGAACACACACGGAGGCCCAAATATGCAAATACAACAGAGCAGAACCACATGTTTTTTTTCCTTAAGATTACCATGTGCCAG
>XM_036952030.1
TAACTGTCGCAAAAGTTGCACATTACATTTAGCTGGTGTGGTTTGTACAGTATCAGCTGCTTCTGACATGAACTAGTGACAACACAAACATCTGAGTAATGTTATCTAACTGTTCGTTAACGTGTTGTCGATGTGCTTCGCTTTAGAATGGCCTCAATCACTTAAAATCAGTTCCCGCATATAGTTTATGAGATTATCTCTTGTTTGCTCAACTATAAAACACTCCAGCACAGGtaaactagttagctagctaaattgggCATAATTTATGTCACTAGGAGAGTGCCTTTGGGCTTCAATGAAAACTGAAGATCCAGGAGAAGAGTTGTGAGGAGACATCAACAGGTTGTGCGAGGATGGACTTTGTCAAAACGGTCCTGGTGACTGGAGGGGCAGGTTTCATTGGGTCCCATTTTGTCTGCTCCCTAGTCAACAGGCACCCAGATTGGCGTATCATcaactttgacaatCTGGACTACTGTTCCAATCTCAGGAACCTGGAGTCTGTAGAGGAGAATGAGAACTACACCTTTATCAGGGGGGATATATGCAATCCATGCTTGTTAAAACACATGTTTGCCACAGAAAACATCGATATCATCTTTCACTTTGCAGCTCAAACACATGTTGAGACGTCCTTCGTATGGCCGTCCAGATACCACATGGTGAACGTGGAGGGGACAAGGGTGCTACTGAAAGAAGCTTTTGAGGCCAAGGTGGAGAAGTTTATTTACATTAGTACAGATGAGGTGTATGGAGAGAGTCTGTATAAGGTCATTCCAAAATTCGTGTCCTTCCTTCAGCTGAACAAAAAATGTACCATCCAAGGGACCAGCCCTCAATCTCGCCACTTCCTGTACGTGGATGATGCCATTGAAGCATTCCACACCATCCTGGAGAGGGGGACAGTGGGAGAAACCTACAACATCGGGACCGACTTCGAAATATCCATCATTCAACTAGCCAGAGAACTTATCAAGATGGTCAGGCATGTACCTGATGCAGAACTGGACGACTGGCTGGAGTTTGTGCCTGACCGGCCAGTGGTTGACCTGAGGTACCCTGTGAACTGTGAGAAGCTGTGGAGGCTGGGCTGGAAGCCTGCAGTGTCATGGGCAGAGGGCATCAGAAGGACAGTCAAATGGTACCAAGAGAATCCAGACTTCTGGCCAGATGTCAAACCAGAAGACCAACCAATTACCTTTGAGCCCAATACCAGAGACCAATAAGCACATAGATTGTGTTCCTGGAGAGCAACAGGGTGTGCTGGATTTTGTTCCAGACCTGGTTCAATTAATCAGTCTTAATTAGGGTTGTTGACCTCCACTAGTCAGCTCAATCACTGTGGGTGTGCAAGGGAACACttatttttgtaaatgttttactAATGAAGGTCGAATGTAATATTCATCATAGTCAATAAATAACTTTATAACGCAGGCTTGAATGTTGAATATTAAACTCCGGATATGCAAAGACAAAATACAAAAGTTGGTTAACTATTTGCAAGTCAAAACTTTTAATTTTGGTAAAATCATACAATAAATGCACAGGTGTTTTCTCGTGCAGTGCACAGCCTCTAAACTAGTACATAAAGCAAATACAAACTAGTGGGCGACTCAGTGGCATTCAGGAGAGTGTCTGGCCAGCCGAAagctctccaacctctcctctctgcagctTCACATTTCCATTCATACGTTTCATCCAAACCTTTACTTTTCAGACTCAGTCAGTCAATGTTACTGTAAGACTCACCACACACTCCACAGAACACACACGGAGGCCCAAATATGCAAATACAACAGAGCAGAACCACATGTTTTTTTTCCTTAAGATTACCATGTGCCAG
>XM_021571026.2
AACTGTCGCAAAAGTTGCACATTACATTTAGCTGGTGTGGTTTGTACAGTATCAGCTGCTTCTGACATGAACTAGTGACAACACAAACATCTGAGTAATGTTATCTAACTGTTCGTTAACGTGTTGTCGATGTGCTTCGCTTTAGAATGGCCTCAATCACTTAAAATCAGTTCCCGCATATAGTTTATGAGATTATCTCTTGTTTGCTCAACTATAAAACACTCCAGCACAGGtaaactagttagctagctaaattgggCATAATTTATGTCACTAGGAGAGTGCCTTTGGGCTTCAATGAAAACTGAAGATCCAGGAGAAGAGTTGTGAGGAGACATCAACAGGTTGTGCGAGGATGGACTTTGTCAAAACGGTCCTGGTGACTGGAGGGGCAGGTTTCATTGGGTCCCATTTTGTCTGCTCCCTAGTCAACAGGCACCCAGATTGGCGTATCATcaactttgacaatCTGGACTACTGTTCCAATCTCAGGAACCTGGAGTCTGTAGAGGAGAATGAGAACTACACCTTTATCAGGGGGGATATATGCAATCCATGCTTGTTAAAACACATGTTTGCCACAGAAAACATCGATATCATCTTTCACTTTGCAGCTCAAACACATGTTGAGACGTCCTTCGTATGGCCGTCCAGATACCACATGGTGAACGTGGAGGGGACAAGGGTGCTACTGAAAGAAGCTTTTGAGGCCAAGGTGGAGAAGTTTATTTACATTAGTACAGATGAGGTGTATGGAGAGAGTCTGTATAAGGAATTAGATGAAACCAGCCCAAGAAGACCCAACAACCCATACTCTGTGTCTAAATCAGCTGCTGAGTGTCTTGTATTGTCCTACAGGGAGAGACACAAGTTTCCTGTTATAATAACAAGGAGCAATAATGTATATGGACCCAGACAGTACTTGGAGAAGGTCATTCCAAAATTCGTGTCCTTCCTTCAGCTGAACAAAAAATGTACCATCCAAGGGACCAGCCCTCAATCTCGCCACTTCCTGTACGTGGATGATGCCATTGAAGCATTCCACACCATCCTGGAGAGGGGGACAGTGGGAGAAACCTACAACATCGGGACCGACTTCGAAATATCCATCATTCAACTAGCCAGAGAACTTATCAAGATGGTCAGGCATGTACCTGATGCAGAACTGGACGACTGGCTGGAGTTTGTGCCTGACCGGCCAGTGGTTGACCTGAGGTACCCTGTGAACTGTGAGAAGCTGTGGAGGCTGGGCTGGAAGCCTGCAGTGTCATGGGCAGAGGGCATCAGAAGGACAGTCAAATGGTACCAAGAGAATCCAGACTTCTGGCCAGATGTCAAACCAGAAGACCAACCAATTACCTTTGAGCCCAATACCAGAGACCAATAAGCACATAGATTGTGTTCCTGGAGAGCAACAGGGTGTGCTGGATTTTGTTCCAGACCTGGTTCAATTAATCAGTCTTAATTAGGGTTGTTGACCTCCACTAGTCAGCTCAATCACTGTGGGTGTGCAAGGGAACACttatttttgtaaatgttttactAATGAAGGTCGAATGTAATATTCATCATAGTCAATAAATAACTTTATAACGCAGGCTTGAATGTTGAATATTAAACTCCGGATATGCAAAGACAAAATACAAAAGTTGGTTAACTATTTGCAAGTCAAAACTTTTAATTTTGGTAAAATCATACAATAAATGCACAGGTGTTTTCTCGTGCAGTGCACAGCCTCTAAACTAGTACATAAAGCAAATACAAACTAGTGGGCGACTCAGTGGCATTCAGGAGAGTGTCTGGCCAGCCGAAagctctccaacctctcctctctgcagctTCACATTTCCATTCATACGTTTCATCCAAACCTTTACTTTTCAGACTCAGTCAGTCAATGTTACTGTAAGACTCACCACACACTCCACAGAACACACACGGAGGCCCAAATATGCAAATACAACAGAGCAGAACCACATGTTTTTTTTCCTTAAGATTACCATGTGCCAG
>XM_021571028.2
AACTGTCGCAAAAGTTGCACATTACATTTAGCTGGTGTGGTTTGTACAGTATCAGCTGCTTCTGACATGAACTAGTGACAACACAAACATCTGAGTAATGTTATCTAACTGTTCGTTAACGTGTTGTCGATGTGCTTCGCTTTAGAATGGCCTCAATCACTTAAAATCAGTTCCCGCATATAGTTTATGAGATTATCTCTTGTTTGCTCAACTATAAAACACTCCAGCACAGGtaaactagttagctagctaaattgggCATAATTTATGTCACTAGGAGAGTGCCTTTGGGCTTCAATGAAAACTGAAGATCCAGGAGAAGAGTTGTGAGGAGACATCAACAGGTTGTGCGAGGATGGACTTTGTCAAAACGGTCCTGGTGACTGGAGGGGCAGGTTTCATTGGGTCCCATTTTGTCTGCTCCCTAGTCAACAGGCACCCAGATTGGCGTATCATcaactttgacaatCTGGACTACTGTTCCAATCTCAGGAACCTGGAGTCTGTAGAGGAGAATGAGAACTACACCTTTATCAGGGGGGATATATGCAATCCATGCTTGTTAAAACACATGTTTGCCACAGAAAACATCGATATCATCTTTCACTTTGCAGCTCAAACACATGTTGAGACGTCCTTCGTATGGCCGTCCAGATACCACATGGTGAACGTGGAGGGGACAAGGGTGCTACTGAAAGAAGCTTTTGAGGCCAAGGTGGAGAAGTTTATTTACATTAGTACAGATGAGGTGTATGGAGAGAGTCTGTATAAGGAATTAGATGAAACCAGCCCAAGAAGACCCAACAACCCATACTCTGTGTCTAAATCAGCTGCTGAGTGTCTTGTATTGTCCTACAGGGAGAGACACAAGGTCATTCCAAAATTCGTGTCCTTCCTTCAGCTGAACAAAAAATGTACCATCCAAGGGACCAGCCCTCAATCTCGCCACTTCCTGTACGTGGATGATGCCATTGAAGCATTCCACACCATCCTGGAGAGGGGGACAGTGGGAGAAACCTACAACATCGGGACCGACTTCGAAATATCCATCATTCAACTAGCCAGAGAACTTATCAAGATGGTCAGGCATGTACCTGATGCAGAACTGGACGACTGGCTGGAGTTTGTGCCTGACCGGCCAGTGGTTGACCTGAGGTACCCTGTGAACTGTGAGAAGCTGTGGAGGCTGGGCTGGAAGCCTGCAGTGTCATGGGCAGAGGGCATCAGAAGGACAGTCAAATGGTACCAAGAGAATCCAGACTTCTGGCCAGATGTCAAACCAGAAGACCAACCAATTACCTTTGAGCCCAATACCAGAGACCAATAAGCACATAGATTGTGTTCCTGGAGAGCAACAGGGTGTGCTGGATTTTGTTCCAGACCTGGTTCAATTAATCAGTCTTAATTAGGGTTGTTGACCTCCACTAGTCAGCTCAATCACTGTGGGTGTGCAAGGGAACACttatttttgtaaatgttttactAATGAAGGTCGAATGTAATATTCATCATAGTCAATAAATAACTTTATAACGCAGGCTTGAATGTTGAATATTAAACTCCGGATATGCAAAGACAAAATACAAAAGTTGGTTAACTATTTGCAAGTCAAAACTTTTAATTTTGGTAAAATCATACAATAAATGCACAGGTGTTTTCTCGTGCAGTGCACAGCCTCTAAACTAGTACATAAAGCAAATACAAACTAGTGGGCGACTCAGTGGCATTCAGGAGAGTGTCTGGCCAGCCGAAagctctccaacctctcctctctgcagctTCACATTTCCATTCATACGTTTCATCCAAACCTTTACTTTTCAGACTCAGTCAGTCAATGTTACTGTAAGACTCACCACACACTCCACAGAACACACACGGAGGCCCAAATATGCAAATACAACAGAGCAGAACCACATGTTTTTTTTCCTTAAGATTACCATGTGCCAG

Function

symbol description
tgds Predicted to enable dTDP-glucose 4,6-dehydratase activity. Predicted to act upstream of or within nucleotide-sugar metabolic process. Orthologous to human TGDS (TDP-glucose 4,6-dehydratase).

NR:

description
dTDP-D-glucose 4,6-dehydratase-like isoform X3

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952029.1 False 1843 mRNA 0.44 13 16352833 16367882
XM_036952030.1 False 1852 mRNA 0.44 10 16353118 16367882
XM_021571026.2 False 2010 mRNA 0.44 12 16353119 16367882
XM_021571028.2 True 1950 mRNA 0.44 11 16353119 16367882

Neighbor

gene id symbol gene type direction distance location
LOC110495668 LOC106575499 coding upstream 7072 16338325 ~ 16345761 (+)
LOC110497062 LOC106575548 coding upstream 20611 16288881 ~ 16332222 (+)
LOC110495667 LOC106575562 coding upstream 74915 16272236 ~ 16277918 (+)
LOC110495657 LOC100380633 coding upstream 262944 16075992 ~ 16089889 (+)
LOC110495658 LOC100136184 coding upstream 291888 16047145 ~ 16060945 (+)
gucy1b2 LOC106575503 coding downstream 54363 16422245 ~ 16427538 (+)
LOC110495673 NA coding downstream 60092 16427597 ~ 16431410 (+)
LOC110495674 LOC106575504 coding downstream 86236 16454118 ~ 16468453 (+)
LOC110495678 LOC106575507 coding downstream 103222 16471104 ~ 16474100 (+)
LOC110495675 LOC106575507 coding downstream 108590 16476472 ~ 16486304 (+)
G1520876 NA non-coding upstream 121764 16230577 ~ 16231069 (+)
G1520721 NA non-coding upstream 149231 16157267 ~ 16203602 (+)
G1520736 NA non-coding upstream 160661 16185985 ~ 16192172 (+)
G1520733 NA non-coding upstream 161360 16185213 ~ 16191473 (+)
G1520964 NA non-coding downstream 44338 16412220 ~ 16412575 (+)
G1520968 NA non-coding downstream 63839 16431721 ~ 16431929 (+)
G1520973 NA non-coding downstream 71077 16438959 ~ 16439393 (+)
G1521008 NA non-coding downstream 148224 16516106 ~ 16516354 (+)
G1520748 NA other upstream 414015 15938230 ~ 15938818 (+)
G1520742 NA other upstream 429934 15919157 ~ 15922899 (+)
G1520649 NA other upstream 536828 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 552952 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 1136589 15207355 ~ 15251952 (+)
LOC110527374 LOC106592210 other downstream 1255934 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1398337 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1471787 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1488259 17856141 ~ 17860614 (+)

Expression


Co-expression Network