LOC110495675 (LOC106575507)


Basic Information

Item Value
gene id LOC110495675
gene name LOC106575507
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16476472 ~ 16486304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571043.2
TCCCATTTCTTGCGTTCGGAGTTGGCAAGGGAACAatagactggcacccaggctaggcCCATGTGTCCTAAAATCTTCTCAACCGTGGACTCTGTCCGCCGATGACCTAAACCAAGCGCACCTTCTTTCAGCCCATGACGTCAGAGTGTCCATCTGGACCAACAATATGGACTGGGGCTCGAGCGCAAAACTATCGCTAAACTCAAAGCGGCTGCCTGGTAGGTTTGGTACCCTTACATCAGCGACGACAACAACGAAGTGACAGCTTTATACTGTGTTAGCGGGGACAATGGTGGCCTCACAGCCCCTGCATCTCCTTCCCCTGTGCCCCCCGTCCTCACCCCAAACCCCCCACTGTGGAGAGCCAGAGTGAGGTACCCAGCCATGGTGGATGTGGGGAAGTGGCCCCTCTTCACCCTGCTGGGAGCTCAGGAGGTTTCCCGCATCAGGCAGGCCTGTGTCTTCGGAACCTCAGCCAACGAAGCCATCTACATCACCCAGGACGATGAGGTGTTGGTGTTTGGGCTGAACTACAGTAACTGTCTGGGGACAGGAGACAGTCAGAGCACCATGGTCCCTAAGAAACTAGACTTCCTCCAAGGCAAGAAGGTGGTCAGTCTCAGCTATGGCAGTGGACCACACGTCTTACTGGCCACAGAAGGGGGAGAGTTGTTTGCCTGGGGGCACAATGGATACAGCCAGCTGGGCAACGGGACCACCAACCAGGGGGTGTCACCCATCCTGGTTTCAACCAACCTGCCGAACAAGAAAATAACACAAGTGGCCTGTGGGTCCCATCACTCTCTGGCCCTGACACACGATGGAGAGGTGTTTGCGTGGGGTTACAACAACTGTGGCCAGGTGGGCTCAGGTGccacagccaaccagccaaccccCCGCAGGGTGACCAACTGCCTGCAGGGTAAAGTGGTAATGGGCATCGCCTGTGGACAGACCTCCTCCATGGCTGTGCTCGACAATGGGGAGgtgtTTGGCTGGGGATACAATGGGAATGGCCAGCTGGGAGTGGGCAACAACGGTAACCAGCACCCCTGTCGCCTGGCAGCCCTCCAGGGTCTCTGTGTACTACAGATCGCGTCGGGCTACGCCCACTCCCTGGCTTTAACAGACGAGGGCCTGCTGTATGCCTGGGGGGCTAACACCTACGGACAGCTGGGTACTGGCAACAAGAGCAACCAGCTCAGTCCTGTACACATCATGGCTGAGAAGGAGAGGATAGTGGAGATCGCGGCGTgccactccacacacacatctGCCTGTAAGACCCAGAGCGGCCAGGTGTACATGTGGGGCCAGTGTAGGGGTCAGTCCATCGTGCTGCCACACCTCACACACTTCTCCTGCACTGACGACGTCTTCGCCTGCTTCGCTACTCCGTCTGTCATGTGGAGGCTACTCTCCATGGAGCATGATGACTTCCTGACTGTGGCCCAGTCTCTGAGGAAAGAGTTCGACAGCCCTGAGACGGCCGACCTCAAGTTCAGCGTGGACGGGAAATACATCCACGTACACAAGGCCGTACTCAAGATCCGGTGTGAACACTTCTGCTCCATGTTCCAGTCCCACTGGACAGAGGACATGAAGGAGGTGATTGAGATCGACCAGTTCTCCTACCCCGTCTACCGCTCCTTCTTGGAGTTCCTCTACACTGACAATGTAGACCTGCCCCCAGAGGATGCCATCGGCCTGTTGGACCTGGCCACATCCTACTGTGAGAACCGTCTGAAACGTCTGTGTCAACACATCATCAAGAGAGGCATCACCGTGGAGAAtgccttctctctgctctctgccgcCGTACGATACGACGCTGAGGACCTGGAGGAGTTCTGCTTCAAGTTCTGTGTGAACCACCTGACAGCGGTGACCCAGACTGCAGCCTTCTGGCAGATCGATGGCAACATGCTCAAAGAGTTCATCTGCAGAGCCAGCCGCTGTGGGTCCTTCAAAAACTGACTGACCACTAACCAGCCCCGAAGGAAGGACGAGGAAAGGGCTAGCATGAACTGGTTTGGCTTGCCGCTACTTGGCCATGGTAGAAAGGACAAAGAAAGAAATGGTATGAACATGGAAACGGCTAGCTTGAACCGGATCTCTAAATTGCCATATTATTAATCCATTGAGACGATGTCTGGCGTGTTCATCTGGTGAGGTCATCTGGTGACTATGGCTCACCTCCAGTTACACAGCCAAAGAAGCCAAAGCCAGTCCCTGCCTGTGCACCTAATATTCCACGCGGACAGATGGCACTGTGGGGAGGAAGTTTGTTTACCAGTCAAAACAGTGACATCAAAGTTCATTGTCTGTCACTGCATGTTTACAAACCTGCTAAATGGCATCAGACTGCTCATTTAGCATCAGTTTAATTGGAGGACCATAGATCTAGCTTACGATGGACACGGTTACATGCCTGACAATGTCTGGTGGCAGGTGATGGCAGTCAACCCCCCCCCGATTTGCAgatttttattatatatttttgttgcatCAAAGTTGTGTACTTTGCTCTACTGTTGAAGGGTTTGATGTAGCTGGCCAGAAATATATTTGACAGGGTTTATGGTTCAGAGCCTGTGGATGTTTTGAGGAAAGGACAGTTTCAATATGATTTGTAATATGCTGTGTACTGACAAGTAGAGCAGAGCTTGTCATTTATTCATTCAGGCACGTTCATTCTCGAGACTTGAGATGAACATGGTGATGCAATGCAACAATGAGCAGGAAGTTGGTTTTCAACTCTTCAGTTCTTTTACCagacagaaaacaaaacatttggaCCATATACAACTTGTTACTCTGTGTGAACTTTTTTATTCTTACAAAAATAGATATTATCTAATTTTTTTTACTATTACTTATTGCATTCCTTTGGTTGAGATtacccccccctccaccccagcATTTCCAATCATTCTGCTGCTTTGAATATTGTTTTAATGGTTTAACGTTCATTACTACATTCTAATTTACTTTGAAGCGAGTGTTTGTACTGAAATTGAAATTCAACGCATTGTAttcttagatttttttttcagaaATAATTTGTTGCTTATGtttatttttgcaattacattttattttgaaatATTTACAATTATTTAGGATGGAAACAGTTGCTATTGATGCCACAATTCAACATGTTTATTGACTTGCAAGTTATGAGATGCAAACACTTTGAAATAAACAAAACTACATTATTGTATACAATGCTGGATGATGCATTAGAAATGA

Function

NR:

description
LOW QUALITY PROTEIN: RCC1 and BTB domain-containing protein 1-like

GO: NA

KEGG:

id description
K11494 RCBTB; RCC1 and BTB domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571043.2 True 3252 mRNA 0.50 13 16476472 16486304

Neighbor

gene id symbol gene type direction distance location
LOC110495678 LOC106575507 coding upstream 2372 16471104 ~ 16474100 (+)
LOC110495674 LOC106575504 coding upstream 8019 16454118 ~ 16468453 (+)
LOC110495673 NA coding upstream 45119 16427597 ~ 16431410 (+)
gucy1b2 LOC106575503 coding upstream 48934 16422245 ~ 16427538 (+)
LOC110495670 tgds coding upstream 108590 16352833 ~ 16367882 (+)
LOC110495676 LOC106575553 coding downstream 549 16486853 ~ 16496136 (+)
LOC110495683 LOC106575518 coding downstream 127345 16613649 ~ 16685491 (+)
LOC110497065 LOC106574631 coding downstream 486779 16973083 ~ 16984148 (+)
LOC110495688 LOC106574622 coding downstream 501436 16987740 ~ 17001956 (+)
LOC110495691 LOC106574621 coding downstream 518725 17005029 ~ 17009539 (+)
G1520973 NA non-coding upstream 37079 16438959 ~ 16439393 (+)
G1520968 NA non-coding upstream 44543 16431721 ~ 16431929 (+)
G1520964 NA non-coding upstream 63897 16412220 ~ 16412575 (+)
LOC110495668 LOC106575499 non-coding upstream 133538 16338325 ~ 16345761 (+)
G1521008 NA non-coding downstream 29802 16516106 ~ 16516354 (+)
G1521026 NA non-coding downstream 53524 16539828 ~ 16540341 (+)
G1521053 NA non-coding downstream 97361 16583665 ~ 16583951 (+)
G1521054 NA non-coding downstream 97845 16584149 ~ 16586203 (+)
G1521065 tubgcp3 non-coding downstream 113922 16600226 ~ 16600714 (+)
G1520748 NA other upstream 537654 15938230 ~ 15938818 (+)
G1520742 NA other upstream 553573 15919157 ~ 15922899 (+)
G1520649 NA other upstream 660467 15756493 ~ 15816005 (+)
LOC110527374 LOC106592210 other downstream 1137512 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1279915 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1353365 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1369837 17856141 ~ 17860614 (+)
G1522684 NA other downstream 1892783 18379087 ~ 18380258 (+)

Expression


Co-expression Network