LOC110527364 (LOC105019822)


Basic Information

Item Value
gene id LOC110527364
gene name LOC105019822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17551254 ~ 17554607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952074.1
CTTGGCACAGGGTAAACATTCGTGTGTCCTCGAGCTTTGAGGGAGGGACTGAGCGAACtgtcagaaagagaaagagaaggagagagagcgagagagggagagaccgaacAAGCGAATGGGAGAAGAGGCTTGCAGCCATCGCCGTGCACTGTAATACTGGATTGTACTTCAGCGGGAGTTAGCGGTTTGGCAGGTTTATACACATCAAAACAGAACAAAGAGAAAGACTCTACAGTACTATAAAAGGAACGGCGAAAGAAAAGAATAAAGCAACAAGGGAGAAATCTCAGCGGCTAAATTTCAAAAGAACCAAGGAGCCAGTGCTTGTGTTTTTCTCTCCTGCAATAGGAACATAAACTGGGACTTTGTATTTCGTGGAGAAATTGCTACATTTCTTCGACCACTAGAAGTTTGTTGGagcaaatatatattttctgtGTATTTTAATTTGAACTCTCAGACGTTCTAAATACGACAAAACTTTATTGACGGACTGCACATGGTTTCAAACTGCTTTTGAGAACCTGGATTTTTATTCATCGCTATTTTATCCATTTCTATTTGAAATACATAAATGCAGTAAACACAACAAATACGGATTTAAATTCATTTTTGCTATCCTTTTTTATTCTTCTGGCGTTTGCAGAACAAGTCAATGGTATTTGCCAAAATACAACCCAGACTTTTAAAGTTTGAATAATTCATGAGATACAATTTGCCTGCTCGAAAAAAGTAACTGAAAAAGGGAGGGGGGTAATCAACAAACATATTCATAAGGGTTAACGGAATGGCCACCGCGGCTTCCAACCCCTATCTGTCCAGCAATAGTATCCTCTCGTCCGGCTCGATCGTGCATTCTGACTCTGGAGGCGGTGGTATGCAGCCGGGCAGTGCTGCGGTTACCTCGGTGTCTGGTGGGTACAGGGGAGACCCCACAGTAAAGATGGTACAGAGTGACTTCATGCAGGGAGCTATGGCAGCGAGCAACGGAGGACATATGTTGAGCCATGCTCATCAGTGGGTGACATCCCTGCCGCACGCCGCCGCTGCGGCAGCTGCAGCCGCTGTAGCAGCAGCCGAAGCCGGATCGCATTGGTCGTCGAGTCCCGTCGGTATGACAGGCAGCCCTCAGCAGCAGGACGTGAAAAACAACTCGGGAAGAGACGATCTACACACGGGCACCGCGTTGCACCACAGGCCCCCACACCTAGGTCCTCATCAAACCCACGCAGGGGCTTGGGGGAGCACAACTGCGGCTCACCTCAACTCGATATCAGggggacagcagcagcagcagtcgctGATCTACTCCAACCCCGGGGGCTTCACGGTGAATGGAATGCTCAGTCAACCAGGGAGCCAGAGCCTGGTGCACCCGGGTCTGGTAAGGGGGGACACCCCAGAGCTGGACCACGGcagccaccatcaccaccatcaccaccagcatccgCATCACCAGCAGCAACACCACGGAGGGGTGAACAGCCACGACCAGCACTCCGACGAGGACACACCGACCTCGGACGACTTGGAGCAGTTCGCCAAGCAGTTCAAACAGCGCCGGATCAAACTAGGCTTTACGCAGGCGGACGTGGGCTTGGCCCTGGGCACCCTGTACGGGAACGTCTTCTCTCAGACCACCATTTGTCGGTTTGAAGCTCTCCAGCTCAGCTTCAAAAACATGTGCAAGCTGAAGCCATTGCTAAACAAATGGCTGGAGGAGGCGGATTCTACCACTGGCAGCCCGACCAGCATCGACAAGATAGCGGCACAAGGTAGGAAGCGAAAGAAGCGCACGTCCATCGAAGTAAGTGTGAAGGGAGCTTTGGAGAGCCACTTCCTGAAATGCCCCAAACCCTCGGCCCAAGAGATAACCTCACTGGCGGACAACTTGCAGTTGGAGAaagaagtggttagagtgtggtttTGCAATAGGAGACAGAAGGAAAAAAGGATGACGCCCCCAGGAGTGCCACAGACGCCGGAGGATGTGTACTCGCAGGTCGGCAATGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAGTGAACCGACCGACCAGAGGGTGACTACAAGTTCGTTCCATCAGGAACAAAAACTGCAACAGCATCAATACGAAGAAGAGTGGCATCCACGAAGCTTCCAACATATTTTTTGCGGGGAGGACTGCATGGTTTAAATTTTCACAAAGAGGAATTGGGATTTTGAGGCCCTCCACGCCTAACGATAAAATATAAACTCACCAGGACTGTCCCCGCCATCTGATCTAAAAGATCACCTCTTTTTTTCAAATGGGATTTTTTTTCATGGGACTTGAACACCGTGAATGAAGAAATAGAAATAGACATTTGAAAAGACTATCTTCAGCTGCACTTATTTGAAATTCTTCTCCTCTCCGTTGCCAAGTGTGACTGAATGGGTGCTGTGGATGTAACTATACATGCTGCCATTTCTAAGCAGTATTCTTTGGTAGGTTTTAATAAACAACAGACTCTGTAAAGCCGGCAATATAGATTCATTAGATCAGATGCTGATCTGACTTATTTACTTTATATTTTTCATCAAAATGACTTGTTTTAATATTCTATTCGGAATACATATCAATTATTCCAAACGGTAATTTATTTCCCCCAGAACTTTGTGTAAGATGTTTTGCTTTCCTGTTTTCATTGTTGACTTCAtttgttttgtttcatttttGTATTCTCGTTTCTAAAAGGAGCACAAATCAACATAAGCTGACATTGACAGTTGTTAGGTAATAAGGGTATATTTTGATGTGATAATTTGATTGTAATTTAATTTCAGTAGTGATTCCTTACGAGCTGATTGAGACCAATAAATTTGTTAGAATGAAATTA
>XM_021608588.2
GGCACAGGGTAAACATTCGTGTGTCCTCGAGCTTTGAGGGAGGGACTGAGCGAACtgtcagaaagagaaagagaaggagagagagcgagagagggagagaccgaacAAGCGAATGGGAGAAGAGGCTTGCAGCCATCGCCGTGCACTGTAATACTGGATTGTACTTCAGCGGGAGTTAGCGGTTTGGCAGGTTTATACACATCAAAACAGAACAAAGAGAAAGACTCTACAGTACTATAAAAGGAACGGCGAAAGAAAAGAATAAAGCAACAAGGGAGAAATCTCAGCGGCTAAATTTCAAAAGAACCAAGGAGCCAGTGCTTGTGTTTTTCTCTCCTGCAATAGGAACATAAACTGGGACTTTGTATTTCGTGGAGAAATTGCTACATTTCTTCGACCACTAGAAGTTTGTTGGagcaaatatatattttctgtGTATTTTAATTTGAACTCTCAGACGTTCTAAATACGACAAAACTTTATTGACGGACTGCACATGGTTTCAAACTGCTTTTGAGAACCTGGATTTTTATTCATCGCTATTTTATCCATTTCTATTTGAAATACATAAATGCAGTAAACACAACAAATACGGATTTAAATTCATTTTTGCTATCCTTTTTTATTCTTCTGGCGTTTGCAGAACAAGTCAATGGTATTTGCCAAAATACAACCCAGACTTTTAAAGTTTGAATAATTCATGAGATACAATTTGCCTGCTCGAAAAAAGTAACTGAAAAAGGGAGGGGGGTAATCAACAAACATATTCATAAGGGTTAACGGAATGGCCACCGCGGCTTCCAACCCCTATCTGTCCAGCAATAGTATCCTCTCGTCCGGCTCGATCGTGCATTCTGACTCTGGAGGCGGTGGTATGCAGCCGGGCAGTGCTGCGGTTACCTCGGTGTCTGGTGGGTACAGGGGAGACCCCACAGTAAAGATGGTACAGAGTGACTTCATGCAGGGAGCTATGGCAGCGAGCAACGGAGGACATATGTTGAGCCATGCTCATCAGTGGGTGACATCCCTGCCGCACGCCGCCGCTGCGGCAGCTGCAGCCGCTGTAGCAGCAGCCGAAGCCGGATCGCATTGGTCGTCGAGTCCCGTCGGTATGACAGGCAGCCCTCAGCAGCAGGACGTGAAAAACAACTCGGGAAGAGACGATCTACACACGGGCACCGCGTTGCACCACAGGCCCCCACACCTAGGTCCTCATCAAACCCACGCAGGGGCTTGGGGGAGCACAACTGCGGCTCACCTCAACTCGATATCAGggggacagcagcagcagcagtcgctGATCTACTCCAACCCCGGGGGCTTCACGGTGAATGGAATGCTCAGTCAACCAGGGAGCCAGAGCCTGGTGCACCCGGGTCTGGTAAGGGGGGACACCCCAGAGCTGGACCACGGcagccaccatcaccaccatcaccaccagcatccgCATCACCAGCAGCAACACCACGGAGGGGTGAACAGCCACGACCAGCACTCCGACGAGGACACACCGACCTCGGACGACTTGGAGCAGTTCGCCAAGCAGTTCAAACAGCGCCGGATCAAACTAGGCTTTACGCAGGCGGACGTGGGCTTGGCCCTGGGCACCCTGTACGGGAACGTCTTCTCTCAGACCACCATTTGTCGGTTTGAAGCTCTCCAGCTCAGCTTCAAAAACATGTGCAAGCTGAAGCCATTGCTAAACAAATGGCTGGAGGAGGCGGATTCTACCACTGGCAGCCCGACCAGCATCGACAAGATAGCGGCACAAGGTAGGAAGCGAAAGAAGCGCACGTCCATCGAAGTAAGTGTGAAGGGAGCTTTGGAGAGCCACTTCCTGAAATGCCCCAAACCCTCGGCCCAAGAGATAACCTCACTGGCGGACAACTTGCAGTTGGAGAaagaagtggttagagtgtggtttTGCAATAGGAGACAGAAGGAAAAAAGGATGACGCCCCCAGGAGTGCCACAGACGCCGGAGGATGTGTACTCGCAGGTCGGCAATGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAGTGAACCGACCGACCAGAGGGTGACTACAAGTTCGTTCCATCAGGTAATTTTGGCGCATTAACAACACCAACTGGAAATTTCAAAGCAAGTAGTCCTATTAGAATTTAAAAAAGATTCCCCCTGTACCCTGTATCTGATTTGCGAAAGACAAGAGGCAGGCATTTGTATATTTAAAAATGGGACATTTTAAACCCCTACTTTAACAAAGGAACAAAAACTGCAACAGCATCAATACGAAGAAGAGTGGCATCCACGAAGCTTCCAACATATTTTTTGCGGGGAGGACTGCATGGTTTAAATTTTCACAAAGAGGAATTGGGATTTTGAGGCCCTCCACGCCTAACGATAAAATATAAACTCACCAGGACTGTCCCCGCCATCTGATCTAAAAGATCACCTCTTTTTTTCAAATGGGATTTTTTTTCATGGGACTTGAACACCGTGAATGAAGAAATAGAAATAGACATTTGAAAAGACTATCTTCAGCTGCACTTATTTGAAATTCTTCTCCTCTCCGTTGCCAAGTGTGACTGAATGGGTGCTGTGGATGTAACTATACATGCTGCCATTTCTAAGCAGTATTCTTTGGTAGGTTTTAATAAACAACAGACTCTGTAAAGCCGGCAATATAGATTCATTAGATCAGATGCTGATCTGACTTATTTACTTTATATTTTTCATCAAAATGACTTGTTTTAATATTCTATTCGGAATACATATCAATTATTCCAAACGGTAATTTATTTCCCCCAGAACTTTGTGTAAGATGTTTTGCTTTCCTGTTTTCATTGTTGACTTCAtttgttttgtttcatttttGTATTCTCGTTTCTAAAAGGAGCACAAATCAACATAAGCTGACATTGACAGTTGTTAGGTAATAAGGGTATATTTTGATGTGATAATTTGATTGTAATTTAATTTCAGTAGTGATTCCTTACGAGCTGATTGAGACCAATAAATTTGTTAGAATGAAATTA

Function

NR:

description
POU domain, class 3, transcription factor 3-B

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952074.1 False 2876 mRNA 0.46 3 17551254 17554607
XM_021608588.2 True 3038 mRNA 0.46 2 17551257 17554607

Neighbor

gene id symbol gene type direction distance location
LOC118941044 NA coding upstream 82062 17448438 ~ 17469192 (+)
LOC110495692 tm182 coding upstream 481976 17065877 ~ 17069278 (+)
LOC110495691 LOC106574621 coding upstream 541715 17005029 ~ 17009539 (+)
LOC110495688 LOC106574622 coding upstream 549298 16987740 ~ 17001956 (+)
LOC110497065 LOC106574631 coding upstream 567106 16973083 ~ 16984148 (+)
mrps9 LOC106574616 coding downstream 37838 17592445 ~ 17610875 (+)
LOC110527370 LOC106575456 coding downstream 56925 17611532 ~ 17620435 (+)
LOC110527374 LOC106592210 coding downstream 69179 17623786 ~ 17631132 (+)
LOC110527377 LOC100136320 coding downstream 77072 17631679 ~ 17636584 (+)
LOC110527382 LOC106575451 coding downstream 84026 17638633 ~ 17640790 (+)
G1522298 NA non-coding upstream 46038 17504937 ~ 17505216 (+)
G1522295 NA non-coding upstream 50501 17500552 ~ 17500753 (+)
G1522291 NA non-coding upstream 54388 17496535 ~ 17496866 (+)
G1522278 NA non-coding upstream 89266 17456742 ~ 17461988 (+)
G1522233 NA non-coding upstream 158873 17392142 ~ 17392381 (+)
G1522336 NA non-coding downstream 22995 17577602 ~ 17578064 (+)
G1522337 NA non-coding downstream 24514 17579121 ~ 17580227 (+)
G1522364 NA non-coding downstream 67004 17621611 ~ 17621810 (+)
LOC110495674 LOC106575504 other upstream 1082831 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1612436 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1628355 15919157 ~ 15922899 (+)
G1520649 NA other upstream 1735249 15756493 ~ 15816005 (+)
G1522415 LOC106575491 other downstream 211612 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 285062 17839669 ~ 17844014 (+)
G1522438 NA other downstream 301534 17856141 ~ 17860614 (+)
G1522684 NA other downstream 824480 18379087 ~ 18380258 (+)

Expression


Co-expression Network