LOC110527377 (LOC100136320)


Basic Information

Item Value
gene id LOC110527377
gene name LOC100136320
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17631679 ~ 17636584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952080.1
gattggtcggggggggatctccttgtctcatcgctggcTCATCCTGGCTGAAGTTGTAGGTGCGAATCCTCTCCGACTGGGAGCGAGTGCCCACCTGGAGAAGGAGTAACATGAATGGCTCTGAGTGGATATTTAACGTTCAGTATTAAACGGATCTTTATGAAATGGAAAGCAGTCTGCCAAGATTTCAGCAGCTCAGGAGAACAGAAGCAACTTCAAACAGAACTCTTATTGGTACCGTCGTTTTCATGGGATTACTTCAAGTGGTATCAAGTGTTGCTGTTGTACTTCACATGACAGGTCATCTTCAACAGGTCACCCAGACCGGACCAGCCCTAGTTGAGACTTCGGACAACCTCCAGAGAGGGGAGTCACAGAGGTGCCCAAAAAAACCCAGGGAGGTCACACCATCAGCCCACCTGCCCATTCAGCCTCCCAGTGGGCACATCCAGAGAGACATCCAGAACACAATGATCCACTGGGACCACGCCCATGGACACCTGTCCAAGATCGGGTACCATGACGGAAGGATCCTGGTCCGCGAGGGAGGCCTGTACTACATCTACGCCAAAACCTGCTTCAGGTACTACGACCAGGTAGAGGAGTCACTGTTGGAGTCTGGGTCTCATACTCCAGGGAGAAAAGGGGCTTCAGCAGAGCCTAGCATTCACAGAGAAGATGGGGTCGGGGCTGGTGCCCTTCTTATACAATACGTGTTCCACGAGCGTCACAGTCACAGTGCCCCCCCCAGGCCAGCTGTGCTGATGAAAAGCGGCAGCACCAAGCACTGGCAGAGGGGCCACTACCACATGTGTTGTCAGCAGCAGGGAGGGGCTTTCCCCCTGGGGCCCGGGGACAGTATCTACGTCAGCGTGTCCAACTCCTGGCTGCTGGACCCGGAAGCTGAGGGAAGCTACTTCGGGGCCTTCAGAATCAGCAGATGA
>XM_021608611.2
ATGGAAAGCAGTCTGCCAAGATTTCAGCAGCTCAGGAGAACAGAAGCAACTTCAAACAGAACTCTTATTGGTACCGTCGTTTTCATGGGATTACTTCAAGTGGTATCAAGTGTTGCTGTTGTACTTCACATGACAGGTCATCTTCAACAGGTCACCCAGACCGGACCAGCCCTAGTTGAGACTTCGGACAACCTCCAGAGAGGGGAGTCACAGAGGTGCCCAAAAAAACCCAGGGAGGTCACACCATCAGCCCACCTGCCCATTCAGCCTCCCAGTGGGCACATCCAGAGAGACATCCAGAACACAATGATCCACTGGGACCACGCCCATGGACACCTGTCCAAGATCGGGTACCATGACGGAAGGATCCTGGTCCGCGAGGGAGGCCTGTACTACATCTACGCCAAAACCTGCTTCAGGTACTACGACCAGGTAGAGGAGTCACTGTTGGAGTCTGGGTCTCATACTCCAGGGAGAAAAGGGGCTTCAGCAGAGCCTAGCATTCACAGAGAAGATGGGGTCGGGGCTGGTGCCCTTCTTATACAATACGTGTTCCACGAGCGTCACAGTCACAGTGCCCCCCCCAGGCCAGCTGTGCTGATGAAAAGCGGCAGCACCAAGCACTGGCAGAGGGGCCACTACCACATGTGTTGTCAGCAGCAGGGAGGGGCTTTCCCCCTGGGGCCCGGGGACAGTATCTACGTCAGCGTGTCCAACTCCTGGCTGCTGGACCCGGAAGCTGAGGGAAGCTACTTCGGGGCCTTCAGAATCAGCAGATGAAGAATAAGGAAGGAGACTTAATTGATGAATTAGTAACTGATATGTCTTTAATCCTATTCCCAGCTCAGGGCTGTAGATGAGGTGGAATTCTTATCTGTTAGATAGCTGGACTGTCTGCATATGGAAtagatttttgtatttttatactGTGAAAACAAACTGAATTTGGCTCACTTTTAATTTAGTTTTATGAAGTTTTCAATAtttatgtattttctgatgtctcTCGTATTCAATTCTGTGTTcagttttttgtgtgtttatagAACATTCCAATAAAGCCATATACAATTGTAAAAATACAGGAGAGAGATTATAAATGCTCTGTTATTATCACCAATATTGCCATGCTTCAACCCATTTTATAGGAAAACAGGGAGACCATTACGTTTCACCCTGAGACTGTTTACCTCAGCACATCTCTGAAAACTTGACACGGTCTCTCAGGCGTACGAGCGCAGGGCACCTCGATTTTACATGCTTTCTGTGGTTAGAAGGGAATAACTCCAGTTAGTGATGAATGCTGGGAGTGCTGTGTCATGCACATTTAGAGGCCCCCTACTCTCCTTACTCATTCCCTGATTTCACTGACCCCTATAGTCCTGCCCCTCCACCACCTCGCCTCATGTCTCTGAGATAAAATGAAATGAGATACTCTTTTGTTGACGTGTAATGTCATTACTATGCTCAGTTTGCCTTCTTCACGTGAAAATCCATTTGAAAAGTGAAGAGTCGATCTGTCCACTTAGATTAGAAcaattcaacacacacaccatgtttcCCTTGAAAGCTTTCTTCACTCCCATGTCATTTCCATGTCCCAAGCGTGCATTAACGCCACCTATCTCAGCTCTACAGTTGCACTGTTAAGAGAGTATTAAAGTCGTCCA
>TU1742931
TTGTAGGTGCGAATCCTCTCCGACTGGGAGCGAGTGCCCACCTGGAGAAGGAGTAACATGAATGGCTCTGAGGTGAGTTGGGAGGAGGGGGACAGTAAAGCATTAGGATGGGACTGTGTGTCGGGGATCACCTGCTGTTTGCGTGCCGTAAGTCTCTGCTCCGTCTCTCTGCCCATCATGCTCTGGTAGAGGCGGGCCTTCAGCACGCACAGGGCCGTGTCATGATTCTGCAGCTGAGAGCGGGACGTCTGACACTCTGCCACCGTACCTAGGGTCAGTCAgtaattccatttcaattcagtcaatatAAGGAGATCAATTGAGAAGTGCC

Function

NR:

description
peptide chain release factor 1, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952080.1 False 944 mRNA 0.55 3 17631679 17635694
XM_021608611.2 False 1670 mRNA 0.47 2 17633638 17636584
TU1742931 True 331 lncRNA 0.54 1 17631732 17632062

Neighbor

gene id symbol gene type direction distance location
LOC110527374 LOC106592210 coding upstream 547 17623786 ~ 17631132 (+)
LOC110527370 LOC106575456 coding upstream 11244 17611532 ~ 17620435 (+)
mrps9 LOC106574616 coding upstream 20804 17592445 ~ 17610875 (+)
LOC110527364 LOC105019822 coding upstream 77072 17551254 ~ 17554607 (+)
LOC118941044 NA coding upstream 162487 17448438 ~ 17469192 (+)
LOC110527382 LOC106575451 coding downstream 2049 17638633 ~ 17640790 (+)
LOC118936563 LOC106591654 coding downstream 68794 17705378 ~ 17715036 (+)
LOC110519433 NA coding downstream 78453 17715037 ~ 17716919 (+)
LOC110528768 LOC106591671 coding downstream 194866 17831450 ~ 17839017 (+)
LOC110527394 LOC106591034 coding downstream 406149 18042733 ~ 18053825 (+)
G1522364 NA non-coding upstream 9869 17621611 ~ 17621810 (+)
G1522310 NA non-coding upstream 46060 17530402 ~ 17585619 (+)
G1522337 NA non-coding upstream 51452 17579121 ~ 17580227 (+)
G1522336 NA non-coding upstream 53615 17577602 ~ 17578064 (+)
G1522368 NA non-coding downstream 1387 17637971 ~ 17638173 (+)
G1522372 NA non-coding downstream 6246 17642830 ~ 17644739 (+)
G1522385 NA non-coding downstream 33872 17670456 ~ 17671940 (+)
G1522348 LOC106575485 non-coding downstream 38626 17675210 ~ 17684532 (+)
LOC110495674 LOC106575504 other upstream 1163256 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1692861 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1708780 15919157 ~ 15922899 (+)
G1520649 NA other upstream 1815674 15756493 ~ 15816005 (+)
G1522415 LOC106575491 other downstream 129635 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 203085 17839669 ~ 17844014 (+)
G1522438 NA other downstream 219557 17856141 ~ 17860614 (+)
G1522684 NA other downstream 742503 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 957750 18594324 ~ 18595682 (+)

Expression


Co-expression Network