LOC110527394 (LOC106591034)


Basic Information

Item Value
gene id LOC110527394
gene name LOC106591034
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18042733 ~ 18053825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952101.1
TGTGACGGATCACATGACGCGAATATGGCCTCCTGACTTGATTTCGTCCTCTTTACAGCTGTGTCTTCTAGCTCTATGTTGCTACCGAAAAACTCCCGTTTTTCACCGAATCTAGCACTCCAGACCCTCCGAGCTACGGCCACACCGAATAACTGACCATGACGGacCAAGCATATGTGACTCTGGCCACAAATGACAACTATGCCAAAGGAGCGATGGTTCTGGGGAGGTCGCTAcgcaaccataacacaaccaaacAACTGGTGGTTCTGATTGGACCGCACGTAGCAGAGCCCTGCAGggccaTGCTGAGTAGCATCTATGACGAGGTGTGTGTGGTGGATATCTTGGACTCTGGGGACACGGCCCACCTGGCCCTGATGAAGAGACCAGACCTCGGAGTGACCTTCACCAAGCTGCACTGCTGGACACTCACACACTACACCAAGTGTGTGTTTATGGACGCAGACACACTGGTGTTGTCCAACATTGATGAGCTGTTTGAGAGGGAGGAGTTATCTGCTGCGCCTGATCCTGGTTGGCCAGATTGTTTCAACTCGGGCGTGTTCGTCTTTAAACCATCCAATGAAACATACCGCAGCCTTATGACACACTGCACTGAGAACGGCAGCTTTGATGgtggggACCAAGGAGTTCTGAACAGTTTCTTCAATACCTGGTCAACAGCAGACATTTCCAAACACCTGCCTTTCATCTACAACCTCAGCAGCATCGCTATATACACCTATCTACCAGCCTTCAAAcagtacGGTCATGAGGCTAAGGTGGTCCACTTCCTGGGGAAGGTGAAGCCATGGAACTACTCCTATGACACCCAGACTGGGAAGGTCAAAGGTCACACCCTCACGCCTGGCTTGGGTGACCTGCACCCTGACTTCCTGGTTCAGTGGTGGAACCTCTACTCCTCTGGGGTCCTACCTGCTCTCAGAGACTCTTATGGAGACACACTGTTCTGCTCCGGCTGCACTGAGGAGGTCGTCTGTGACCGTGTGGTTGAGATCATCCTCCCCCCGCCTCCCCCTCAGGCGCCCCAGGTGTCcagtgaggagaggaggcagcGATGGGAGGCGGGCCAGGCGGACTACATGGGAGCCGACTCCTTCGAAAGCATCCAGAGGAAACTGGACTGCTTCCTCAAGTAGAGGGCCAGAGGAGGGATGACGGATGGAGAGGGCATCCATTGGCAGGCCGGAGATGCGTCAGTCAGGGCGGGGCGGGGAACTGGCATTCGACCAATCAGAAGAGAAAGCGGTAGAGCATGACGTATTGAAAAACAGTCACATcctgggcctctctctctctgtttttctgtgtgtgtgcgtgttcgtgCATCTGTGTGTGGCCTGGTCCTGCAGAAATAACCCCTGCAGAGACTGGTCCATTCAGTGTTTGAACACCAGTTTACTACACTATGCAGCCCCCATACCCCCACCTCAGCGCAGAAGCCTTGGTCAGTAAGTAATGACTCAGTAATAACCTCACTGTGACTCTGCCTCACCAAGTCCCATCCAGACCCCATGACTCTAACAGCTCTAACCCAGTTACTCAGTCAAGCCTGAAAATGATCGGGCAGTCATGCTCTTACTCTTTAAAGTATTCAGAGAGGGATCGGTATGAGGTATTTCCCTCTAAAATGGAAGAACTGTTATTTTGTTTAGGTTTGCATCCCAGTGGTTATTTTTGCTCTCCATATGCGTGTTGTGCATGGTTGTTTCTTTATATTATGATTATTGTGACGGAAGCCTGTTTCTAAAGTGGAAAACCCACTGTAGCGCTTGTCATTTCGCCATGTCCTGTTTGATGTCATCATTTCCTGTTGGGTTTCCTCACGTCCTGTGTAGTCTGACCAGTTGCCTTACCACTGTCAAAGACTCCTACTACACAACTAGGCCTATTCTAGTTGTCGCCGTTCACTGTTTACAGAAAACACTTCTCTGCTGctgccaaacccccccccccccttcacatcTACTCCATTCAGACCTACCTCTACGCTCCACTCTACTCCATTCAACCCTCCTACAGACTTACCTCTACGCTCCACTCTACTCCATTCAACCCTCCTACAGACTTACCTCTACGCTCCACTCTACTCCATTCAGACCTACCTCTACGCTCCACTCTACTCCATTCAACCCTCCTACAGACTTACCTCTacgctcctccagctcctctacTCATTCAACCCTCCTACAGACTTACCTCTACGCTCCGCTCTACTCCATTCAACCCTCCTACAGACTTACCTCTacgctcctccagctcctctacTCATTCAACCCTCCTACAGACTTACCTCTACACTCCAATCTACTCCACCCTTCTCCACTCTCAACTTGACACCCCCCATCTCCAACTCACCCCTCCTACAGCCCTACCGTATCAACCCCCCCACCACCCTCCCAACATCAACACTCTGatacctcttcctctccctgaaGTGTGTACCTTCATCCCACCTTGTGGATTTAAAAGGAATGGACTGGTATGAAGAAAATCATGTCAGATATTATTTTGACATGGTGAAAACTCAAGTCCATGATTAATCCAATGCTTTCACATCCATGAAGGGGACTGAGTGAGCAGGACAAGTGCACACGGGGGCATAAGGCCAGTAGGGaatcctaacacacacacacagcctaaaaTGAAATAGTAAGTAATGGGAAGTTGTAGTTTTGTGGTCCCTCTTAATACACCCATAAACGGCTCTATAGAGAAGTTTCCCAACGCTGTGAAACCTTGTGTTCTGAACACACCCCGGTAGTTCTCACTGTTTCTGTTTTCTGTAGACACCTAATAAAGGACTGTTGAAGTCTC

Function

NR:

description
glycogenin-1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00750 GYG1, GYG2; glycogenin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952101.1 True 2841 mRNA 0.50 7 18042733 18053825

Neighbor

gene id symbol gene type direction distance location
LOC110528768 LOC106591671 coding upstream 203716 17831450 ~ 17839017 (+)
LOC110519433 NA coding upstream 325814 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 327697 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 401943 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 406149 17631679 ~ 17636584 (+)
LOC110528909 LOC106595470 coding downstream 3877 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 22375 18076200 ~ 18093990 (+)
atr atr coding downstream 43738 18097563 ~ 18129363 (+)
LOC110495694 LOC106575448 coding downstream 77281 18129571 ~ 18136939 (+)
LOC110495707 LOC106574672 coding downstream 89311 18143136 ~ 18145481 (+)
G1522544 NA non-coding upstream 20452 18022058 ~ 18022281 (+)
G1522487 NA non-coding upstream 102022 17938478 ~ 17940711 (+)
G1522466 LOC100534484 non-coding upstream 109452 17921980 ~ 17933281 (+)
G1522498 LOC106575464 non-coding upstream 121640 17920084 ~ 17921093 (+)
G1522477 NA non-coding upstream 153525 17885675 ~ 17889208 (+)
G1522600 NA non-coding downstream 162815 18216640 ~ 18217776 (+)
G1522563 NA non-coding downstream 170957 18224782 ~ 18231387 (+)
G1522601 LOC106575419 non-coding downstream 178065 18231890 ~ 18236181 (+)
G1522604 NA non-coding downstream 186084 18239909 ~ 18241184 (+)
G1522438 NA other upstream 182119 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 198719 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 276039 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 415089 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1574310 16454118 ~ 16468453 (+)
G1522684 NA other downstream 325262 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 540509 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 662037 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 905619 18959384 ~ 18978475 (+)
G1523506 NA other downstream 968180 19022005 ~ 19022395 (+)

Expression


Co-expression Network