LOC110496788 (gart)


Basic Information

Item Value
gene id LOC110496788
gene name gart
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 29253527 ~ 29274733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496788
ATGGCAGAGCGGGTGCTGGTGATTGGCAGTGGTGGGTGGAAAAACACCCTGGCATTGAAGCTGGCACAGTCCCCACACATCCAGGGGGTCCTGGTTGCACCAGGGAATGCTGGCACCGACAACAGTGGAAAGATCTCCAACTCTGAGGTGTCTGTGAGTAACCACACCATCCTGGCTCAGTTCTGTAAGGAGCATAGCGTGGGGCTGGTGGTGGTAGGGCCCGAGGTGCCTCCGGCAGCAGGCATGGTAGATGACCTGCAAGCGGCGGGGGTCCAGTGTTTCGGCCCTTCGTGGAAGGCTGCCCAGTAGGAGGCAAGTAAGAGTTTCTCCAAGGCCTTTATGGACCGCCACGGCCTCCCCACAGCCCACTGGTGCTCCTTCACTGACCCCCAGGAGGCCTGCAGCTACATCCGCGGGGCCAGTTTTCCTGCTCTGGTGGTGAAGGCCAGTGGCCTGGCTGCAGGGAAGGGTGTCATTGTGGCCAAGGACCAGGAGGAAGCCTGCCAGGCTGTGCTGGACATAATGAAGgacaAAATGTTAGTCTCTGCCGGGGAGACTGTGGTGGTGGAGGAACTGCTGGACGTAGAAGAAGTGTCTGAGTGTCCGTACCTCTTTTCTTGTGAAATACCAACGTGTACATGCACATGTCTGTGTTTCAGTGATGGCTACACTGTGTCCCCCATGCCCCCGGCCCAGGACCACAAAAGCCTGCAGGATGGGGACCTGGGCCCCAACACTGGCAGCATGGGGGCCTACTGCCCCACccctcagGTGTCTCAGGAGCTTTTGCAGCAGATCAGAGAGACTGTCCTGCAGAAGACTGTGGATGTTATGAAGGAGGAGGGTGCCCCCAATGTGGGTGTGCTGTACGCTGGGCTGATGTTGACCAAGCAGGGGCCAAAGGTCCTGGAGTTCAACTGTCGCTTCGGCGATCCAGAGAGTCAGGTGCTGATGCCCTTGCTGAAGAGTGACCTGTACGAGGTGCTCCAGAGCACTCTGCAGGGAAAGTTGGCATCCATCGCCCCTGTGTGGCACCAGGACAGATCTGCAGTTACTGTGGTCATGGCCAGCCCTGGCTACCCTGGCTCCTATAAGAAAGGTGTTGCAATCCCAGACGCATCTCGTTGGATCATCCCCCCTGTGTTCTCGTGGCTCCAGGTGGAGGGGAGCTTGTGCGAGGAGGAGATGGGGCGCACCTTCAACTGTGGCCTTGGGGCTGTAATGGTGGTGGCCTTTCCGGACGCCCAGAGGGTTCTCAGGCAGCTCCAAGCCAATGAGGATGCGTGGATCGTGGGCTCGTTGGTCCACAAGCAGCCTGGGGCCGAGCCGGTGGTGATCAGGAACCTGATCCCTGTGTAGTAAACCTGGGGCCCATGCAGAACGGAGCGTCACAAGGGGATAGCAGCGGCAACGCCCCCCGCAAGAGGGCCAGGGTGGGCGTCCTCATCTCAGGCACAGgcaccAACCTGCAGGCACTGATGGAGCAGGCCAAGAGAACGTCCAGCTCAGCAGAAATCGTGGTGGTAATCTCCAACCGGCCGGGGGTCTTTGGCCTCAAAAGAGCCTCTTTGGCCATCAGATCCTGCCTCCGCTCACCAATACTAACCATAACCAGATGTTATAAAAATTAG

Function

symbol description
gart Predicted to enable phosphoribosylamine-glycine ligase activity and phosphoribosylformylglycinamidine cyclo-ligase activity. Acts upstream of or within camera-type eye development; chordate embryonic development; and pigmentation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pigment cell; and yolk syncytial layer. Orthologous to human GART (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase).

NR:

description
PREDICTED: trifunctional purine biosynthetic protein adenosine-3

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004637 phosphoribosylamine-glycine ligase activity molecular_function
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity molecular_function
GO:0004644 phosphoribosylglycinamide formyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496788 True 1631 mRNA 0.59 12 29253527 29274733

Neighbor

gene id symbol gene type direction distance location
LOC110495974 LOC106574337 coding downstream 448172 28771350 ~ 28805355 (-)
LOC110495973 LOC106574336 coding downstream 485464 28760672 ~ 28768063 (-)
LOC110495971 cyyr1 coding downstream 494842 28739018 ~ 28758685 (-)
LOC110495970 app coding downstream 522215 28689122 ~ 28731312 (-)
LOC110495969 LOC106574334 coding downstream 577535 28672829 ~ 28675992 (-)
LOC110495975 LOC106574338 coding upstream 139444 29414177 ~ 29841599 (-)
LOC110495976 NA coding upstream 221560 29496293 ~ 29497472 (-)
LOC110495979 LOC106574339 coding upstream 1042643 30317376 ~ 30396869 (-)
LOC110496790 lig4 coding upstream 1143110 30417843 ~ 30441655 (-)
LOC110495980 irs2 coding upstream 1182133 30456866 ~ 30476059 (-)
G1535156 NA non-coding downstream 103845 29149482 ~ 29149682 (-)
G1535062 NA non-coding downstream 166626 29086631 ~ 29086901 (-)
G1535047 NA non-coding downstream 176827 29076211 ~ 29076700 (-)
G1535041 NA non-coding downstream 179701 29073429 ~ 29073826 (-)
G1535015 NA non-coding downstream 195617 29057511 ~ 29057910 (-)
G1536211 NA non-coding upstream 628007 29902740 ~ 29902941 (-)
G1536273 NA non-coding upstream 669668 29944401 ~ 29944617 (-)
G1536280 NA non-coding upstream 673315 29948048 ~ 29948327 (-)
G1536299 NA non-coding upstream 685455 29960188 ~ 29960448 (-)
LOC110495963 LOC106574327 other downstream 900909 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 1216911 27995381 ~ 28092196 (-)
LOC110496785 LOC106574363 other downstream 1339007 27839770 ~ 27914607 (-)
LOC110495948 LOC106574314 other downstream 1454914 27754174 ~ 27798978 (-)
G1533378 NA other downstream 2063978 27187622 ~ 27189549 (-)
G1536703 NA other upstream 1009639 30284372 ~ 30284762 (-)
G1537022 NA other upstream 1245159 30519892 ~ 30525373 (-)
G1537091 NA other upstream 1327983 30602716 ~ 30603392 (-)
LOC110495992 LOC106588166 other upstream 1637094 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 1737145 31008756 ~ 31014201 (-)

Expression


Co-expression Network