ndufv1 (LOC106588156)


Basic Information

Item Value
gene id ndufv1
gene name LOC106588156
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30606694 ~ 30612658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571552.2
TCTATCAAGCGAAGTGTAAATTagggagttgtactccagtctagtaggtggcagtAATGCAACAAATTGGATGCCTCATAGAAAcctcatagaagaagaagaacgtAATTTTGTAACACAGGTTCGGGATTCAACACCAAGGTATCAGGATGCTGTCCCTGTCCCGGTTGGCTTTGGTCTGTGCTGCGGCTCGGGGCCCAGTTGCTGTCTGTCAAGGCAGAGTGACGTCCATCACACGATTTAACAGCACAACTGTTgagGCACCACCAAAGAAGACAACATTTGGACCCCTGGCTGACCAGGATAGAATTTTCACCAACCTGTATGGCCGACATGACTGGAGGCTAAAGGGAGCTCAAAGTCGTGGTGACTGGTACAAGACCAAGGAGATCCTGCTGAAGGGAGTGGACTGGATCCTCAACGAGATCAAAGTTTCAGGGCTGCGGGGGAGAGGTGGAGCAGGGTTCCCCACCGGCATGAAGTGGGGCTTCATGAACAAGCCCAGTGATGGCAGACCAAAGTACCTGGTGGTGAATGCTGATGAAGGAGAGCCTGGCACCTGTAAGGACAGGGAGATCATGCGTAACGACCCCCACAAGCTGGTGGAGGGCTGCCTGGTGGCCGGGAGGGCCATGGGAGCCCGCGCTGCCTACATTTACATCAGGGGAGAGTTCTACAATGAGTCCTCCAACCTGCAGGTGGCCATCAACGAGGCCTATGCAGCTGGTCTGATTGGGAAGAACTCCTGCGGCTCTGGCTACGACTTTGACGTGTTTGTGATGCGTGGGGCTGGTGCCTACATCTGTGGAGAGGAGACGGCACTCATCGAGTCCCTTGAGGGCAAGCAGGGGAAGCCCCGCCTGAAGCCCCCATTCCCTGCTGACGTTGGTGTGTTTGGTTGCCCAACAACTGTCGCCAACGTTGAAACGGTAGCCGTGGCGCCCACTATTTGTCGCCGTGGTGGCACATGGTTCCTAGGCTTTGGCAGAGAGAGGAATTCAGGCACAAAGCTCTTCAACATCTCAGGTCATGTCAACACCCCCTgcacagtggaggaggagatgtcTATTCCTCTCAAGGACCTCATCGAGAGACACGCAGgtggTGTGCGCGGTGGCTGGGACAATCTGTTGTGTGTGATCCCTGGAGGCTCTTCCACACCCCTCATCCCCCGTTCAGTGTGTGACACCGTGCTGATGGACTTTGACGGCCTGGTCCAGGCTCAGACTGGCCTTGGCACTGCCGCTCTCATCGTCATGGACAAATCTACTGACGTCATCAGAGCCATCGCCCGCTTGATTGAGTTCTACAAACATGAGAGCTGTGGCCAGTGCACCCCCTGCAGAGAGGGAGTGGACTGGATGAACAAGATGATGTGGCGCTTTGTGAAGGGTGATGCGCGGGCGGCTGAGATCGACATGATCTGGGAAATCAGCAAGCAGATTGAGGGGCACACCATCTGTGCCCTGGGTGATGGAGCCGCGTGGCCCGTACAGGGATTAATCAGACACTTCAGGCCTATCATGGAGACCCGAATTGCAGAGTTCCAGCAGAAGGACCAAGCCAGAGCTTAAATCACTCCTTcgttcccttcctctacccttcaTTCACAAATTATTTAAATAGAAATGCATTGCCTCATTCATTGTGAATAATTGCCTTCCCGTTTTTGCCTTTGTCTGAAGTCGCCAATAAAGCTGTATGTAACTAAAATAGTTAAACAATTTAACAGTTGTGCTGTATATGTATTGTTCATTTAAGACTTACAAAATTCAATCTTGGAA

Function

NR:

description
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K03942 NDUFV1; NADH dehydrogenase (ubiquinone) flavoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571552.2 True 1784 mRNA 0.53 11 30606694 30612658

Neighbor

gene id symbol gene type direction distance location
LOC110515180 NA coding downstream 104514 30498183 ~ 30502180 (-)
LOC110496791 cars2 coding downstream 108860 30489683 ~ 30497834 (-)
LOC110495980 irs2 coding downstream 130635 30456866 ~ 30476059 (-)
LOC110496790 lig4 coding downstream 165039 30417843 ~ 30441655 (-)
LOC110495979 LOC106574339 coding downstream 209825 30317376 ~ 30396869 (-)
hcn3 LOC106588157 coding upstream 8072 30620730 ~ 30637860 (-)
LOC110496793 LOC106588158 coding upstream 31852 30644510 ~ 30649112 (-)
LOC110496794 LOC106588158 coding upstream 48943 30661601 ~ 30674549 (-)
LOC110495990 hax1 coding upstream 175453 30788111 ~ 30802586 (-)
ubap2l ubap2l coding upstream 190525 30803183 ~ 30896875 (-)
G1537077 NA non-coding downstream 8517 30576856 ~ 30598177 (-)
G1537072 NA non-coding downstream 8682 30568419 ~ 30598012 (-)
G1537082 NA non-coding downstream 13571 30588248 ~ 30593123 (-)
G1537073 NA non-coding downstream 23131 30568639 ~ 30583563 (-)
G1537079 NA non-coding downstream 23523 30580980 ~ 30583171 (-)
G1537140 NA non-coding upstream 27317 30639975 ~ 30640433 (-)
G1537170 NA non-coding upstream 76188 30688846 ~ 30689666 (-)
G1537172 NA non-coding upstream 77636 30690294 ~ 30690881 (-)
G1537194 NA non-coding upstream 91302 30703960 ~ 30704314 (-)
G1537631 NA non-coding upstream 108745 30721403 ~ 30721673 (-)
G1537091 NA other downstream 3302 30602716 ~ 30603392 (-)
G1537022 NA other downstream 81321 30519892 ~ 30525373 (-)
G1536703 NA other downstream 321932 30284372 ~ 30284762 (-)
LOC110495963 LOC106574327 other downstream 2254076 28241494 ~ 28368147 (-)
LOC110495955 LOC106574324 other downstream 2570078 27995381 ~ 28092196 (-)
LOC110495992 LOC106588166 other upstream 299169 30911827 ~ 30955199 (-)
LOC110495994 LOC106588168 other upstream 399220 31008756 ~ 31014201 (-)
LOC110496004 LOC106588173 other upstream 903453 31492852 ~ 31524883 (-)
LOC100136047 LOC106605923 other upstream 1073094 31684840 ~ 31692733 (-)
G1538595 NA other upstream 1101848 31714506 ~ 31715181 (-)

Expression


Co-expression Network