LOC110496013 (LOC106588183)


Basic Information

Item Value
gene id LOC110496013
gene name LOC106588183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31771612 ~ 31777330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571628.2
ACATGACCCTTCTGACAAATGTCCCTACGCCTTCCGTCGGCTTGAGCTACCATACAGACGTCAGTGACTGTATGCTACCGTGAAGATGGCGGAGGCTGCGGCGGCACCACAACACCGTTTTTTCTGTCACTGTTGTAAAGGTGAAATCGACCCTAAACTCCCGGAATTCACATGCCCCAGGTGTGAGTCCGATTTCATTGAGGAGGTGACAGAAGACTCCAGTCTCTTGGAGAACAGCAGCACTGCAGAGGCCAATGATGATGCAGGCACACTCTTTTCAGAGCTGTGGCAGCTGCTGTttatggaacactctgctctTCTCTCGGACCCCTCCACctctgagtctgagtctgaccAGAGCCATCTACAGGCTGCCGCAGTGGAGGGAGACGTAGAGGGCCCTTCTGAAGTGCCTGTGGCCTCTGTGGGAGGCACAGATCCTTTAGTGCCTGAACCGGAACGCCCCTCTCGTCCGCCTAGCCAGGGGAGGCGACAGTCCCACACGCCAGCAGTGGAGGGTATTGTGCAGCAGTTTTTGGCTGGTCTGTTTGCCAACAATGGAAATCCAGGCATCGCACCAGCTGCactgTCTGGCATGCTCCATTCAAATCCAGGGGACTATGCCTGGGGTCAGGGAGGTCTAGACGCAGTTATCACAGAGTTGTTAGGTCAGTTTGAGGGCACAGGTCCACCTCCTGCAGAGAAGGAGATGATCTCATCCCTCCCCACAGTCAACGTCTCTCAAgaacagacagATAGCAGACTGGAGTGTCCAGTATGTAGGGAGGAGTACTCCATGGGAGAGTCTGTCAAACAGCTGCCCTGTCTCCATTATTTCCACAGTGACTGCATAGTGCCATGGCTTGAACTGCACGATACCTGTCCTGTGTGTCGTAAAAGTCTTGACGGCGTCGACCAGAGCACTCAGCCCCCACCAGAACCCCCAGAGCCCCTCTCCATCAGGACAGACCCtcaggaggagagacaggctaTTTGAGGATTaggcctcctccctctcttcgaCCTGTCTGGCATCTCTTCTTCCCTTTACTCCTGAACGAGGCTCATCTCTATCCTCATGCCTCGTCTTTAGCCATGCGTTTATTGAAGAGACATATTTCAATTCAACTGTGCCTCATTGTCAAAATTCAACTCTCCTCAAAAATTCACTTCACAATGCATTTTACTAGGGAACTTTGTTTGACTTTAGAAAGTTCCAATATGCCTGCAGTATCCAACTGTTTTCTGACAAAATGTTATGGATTTGATTTGTCCCTTCGTAGGGTATTTCCCCCAGTGTTCTGATTGGCTCTCATTTTGTATTCAAACCACATGAACTGACATCCTTGAGCCACAGAGAAGTGATAAATGTGATGAAATTAGATACATTGGGGAAAATCCTAAAAGGTGAGCTGAACTCACTCTCTTGCGTTGAAGCTCTGGGTTAGATCATTTGCCCACTGTTCTCGCTGACATCTTTGGTTGCAtcccaataatctctcctttctcctgaagGGTACACTTGTTCACTTCATGGATTTGAAAGGATATGACTGGTATATGGAAACTCCTTCCAGTCCATGCATgctacaccaatccaatgctttcaCATTTGTGGGGACTAGTGAACGAGTGCACACTTCCGTAGGAAGGAGAGGTTAATgccgattcaaataatcaaagctggATGAGTAGTTGATTATTtgagggcaaaaaccaaaacgtgaaccccttggggtccccagcaccgagtttgggaaaccctgggttATTGGAATGAAAACACTGAGAATcacaattgcatactcctcacttcctctctcctcacctccttatcaaaacccattggaggaggtcagaggggcgggacatctggctttctcatccaatgggtgtTGAGGAGATGAAGCGAGGAGATGACGCGAGGAGTACGCAATTCAAATTCTCCCGTCTCCCGCTTCCTCTTAATCTCACATAGCAGTATTTGTTAATAATGTCCACCTCTCTTTATGGCCCCTATTAAACCCTAATACTTTGTCCTTTACACTATCCACCTCCTTCATGTTCTAACTTTATGCACTTTTCTAATGCATTAGTATTTTGCCTCTTTCAATCATTCTGTTTTTAATACGTAcaagtcacagcaaaataataaATGTGTTTTTAGTATTTGA

Function

NR:

description
E3 ubiquitin-protein ligase RNF115-like isoform X1

GO: NA

KEGG:

id description
K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571628.2 True 2174 mRNA 0.48 9 31771612 31777330

Neighbor

gene id symbol gene type direction distance location
ash1l LOC106588182 coding downstream 2506 31722514 ~ 31769106 (-)
LOC100136047 LOC106605923 coding downstream 78879 31684840 ~ 31692733 (-)
LOC110496009 LOC106588178 coding downstream 117376 31628863 ~ 31654236 (-)
LOC110496005 s10a4 coding downstream 236236 31530404 ~ 31535376 (-)
LOC110496004 LOC106588173 coding downstream 246729 31492852 ~ 31524883 (-)
LOC110496014 LOC106588184 coding upstream 1934 31779264 ~ 31784592 (-)
LOC110496016 LOC106588185 coding upstream 19738 31797068 ~ 31802818 (-)
dnjc8 dnjc8 coding upstream 249227 32026557 ~ 32032535 (-)
LOC110496024 LOC106588192 coding upstream 259825 32037155 ~ 32056879 (-)
atp5if1a LOC106588193 coding upstream 279950 32057280 ~ 32058819 (-)
G1538500 NA non-coding downstream 280 31770226 ~ 31771332 (-)
G1538602 NA non-coding downstream 29762 31741482 ~ 31741850 (-)
G1538596 NA non-coding downstream 55874 31715499 ~ 31715738 (-)
G1538691 NA non-coding upstream 129259 31906589 ~ 31917932 (-)
G1538735 NA non-coding upstream 186675 31964005 ~ 31964594 (-)
G1538744 NA non-coding upstream 202201 31979531 ~ 31979796 (-)
G1538745 NA non-coding upstream 203206 31980536 ~ 31981141 (-)
G1538746 NA non-coding upstream 205210 31982540 ~ 31982930 (-)
G1538595 NA other downstream 56431 31714506 ~ 31715181 (-)
LOC110495994 LOC106588168 other downstream 757436 31008756 ~ 31014201 (-)
LOC110495992 LOC106588166 other downstream 818304 30911827 ~ 30955199 (-)
G1539348 NA other upstream 784396 32561726 ~ 32562120 (-)
G1540148 NA other upstream 1122248 32899578 ~ 32936569 (-)
G1540473 LOC106581475 other upstream 1614009 33391339 ~ 33391752 (-)
LOC110496048 LOC106588215 other upstream 1825144 33602474 ~ 33610948 (-)

Expression


Co-expression Network