LOC110496409 (LOC106588651)


Basic Information

Item Value
gene id LOC110496409
gene name LOC106588651
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 48837413 ~ 48851235 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572291.2
TCGTCGCGCGTCGTTTTCTGTACTGCTCTGATACAAGATTTGGCCAGTGAACACGTGTTGGAACTTGGAGTGGATGGATAGTCAATTCTAATTAAGTCACCTTTTTTAAAAGTATTATTCAAAATTTGAAGGAAAAatttaaatgtgtatatatatcgaCAATTTAAAATCAATCAAGTCCAAATATTTACCATTTGACCGCCTTACACTATTTCGTTTTTGTGCCACAATGAAGTACATCCTGGTCACTGGTGGTGTCATCTCAGGCATCGGGAAGGGCATCATAGCCTCCAGTGTGGGAACCATCCTCAAGTCATGTGGTCTGCGTGTCACCGCCATCAAGATTGACCCCTACATCAACATAGATGCAGGGACCTTCTCTCCGTACGAGCATGgTGAGGTGTTTGTGCTGGACGATGGGGGTGAGGTGGATCTGGACCTGGGGAACTACGAGAGGTTCCTGGACATCAGACTGACCAAAGACAACAACCTGACCACCGGCAAAATCTACCAGTCTGTCATCaacaaggagaggaaaggagactaCCTGGGAAAGACCGTACAGGTGGTGCCCCACATCACTGATGCGATCCAGGAGTGGGTGATGCGTCAGGCCAGAGTACCTGTTGACGATGACGGTGTGGAGCCTCAGATCTGTGTCATCGAGCTAGGAGGCACTGTGGGAGACATCGAGAGCATGCCTTTCATCGAAGCCTTCAGGCAGTTCCAGTTCAAGGTGAAGAGGGAGAACTTCTGTAACATCCACGTCAGCCTGGTCCCACAGCCTAGTGCCACAGGAGAGCAGAAGACCAAACCCACTCAGAACAGTGTCAGAGAGCTCAGAGGACTCGGCCTGTCTCCTGATCTGATCATGTGTCGCTGCTCCACTTCCCTGGAGAACTCTGTTAAAGAGAAGATCTCCATGTTCTGTCATGTAGAACCTGAACAGgtgATCTGCGTGGCAGACGTGTCGTCCATCTACAGAGTGCCTCTGCTACTGGAGAACCAGGGGGTGGTGGGCTACTTCTGTCAGAGATTAGACCTTCCTATAGAGACCCGCCCCAGGAAGATGCTCACTAAGTGGAAGGAGATGTCTGACAGGTCAGACAGGCTCCTAGAGCAGTGTTCTATAGCCCTGGTGGGGAAATACACCAAGTTCACAGACTCCTACGCGTCAGTCATCAAAGCGCTAGAACACTCGGCCTTAGCCATCTGCCACAAACTGGATATCAAGtaTATTGACTCAGCAGACCTGGAGCCAAACACACTGAAGGAGGAGCCTGTGAAGTACCATGAGGCGTGGCAAAAACTCTGCAGTGCTGATGGCATCCTGGTACCTGGAGGATTTGGagtcagagggacagaggggaagatccacgccatcaactgggcacgCAAACAGAAGAAACCCTTCCTAGGTGTGTGTCTAGGGATGCAGCTGGCTGTGTGTGAGTTTGCCAGGAATGTGCTAGAATGGGAAGATGCCAACTCTACAGAGTTTCATCCCGAATCAAAGCATCCTGTTGTGATTGACATGCCAGAACACAATCCTGGGCAGATGGGTGGGACCATGAGGCTGGGAAAGAGACGGACCATTTTCAAGACCACCAACAGTATACTAAGAAGACTTTACGGAGATGCTGAGTACGTGGATGAGAGACACCGACATCGCTTTGAGGTGAACCCAGAGCTGAAGGATCACTTTGAGGGGAAAGGCTTTCACTTCGTGGGTCAAGACGTAGAAGGCGAGCGAATGGAAGTCATTGAGTTAGACGATCATCCGTATTTCGTAGGAGTGCAGTATCATCCCGAGTTCACCTCTCGCCCCATCAAACCATCGCCTCCCTACTTTGGCCTCCTGCTGGCATCAGCCGGGAAACTACAGAGCTACCTACAGAAGGGCTGCTGTCTGTCTCCACGGGACACATACAGTGATCAGAGCGGCAGCAGCACCCCAGACTCAGAAATAGTTGAGTCCTCCACCTCACAGGATTGTGTGACTGAGGGAAAGGAACAATGAAGTGTTGAAAAAGGAAATTCCTTTCTAAACGGAGGATGAAGACAAGTGCTAAAATTAGCTCGTAAGATGTTTCCTGACCTGAATGGGTTATTTGGCATGTCTATATGCTCCCGACAACAGGCCGTCAAATGAAACTGACAGTTTCTTTACCCAGGATAACTCCCTTGAGATGAAACCaatggatggggagcgtctcaTTTCATTGAAACACTGAATGTcaaggaaccccccccccccaatatttgACAAGAAATGATGTCTGTACATTGCAGGGTTAAGTCATCTTTATTGCAGTAAACGGGCTTTACAAGTGGAGAGGAAATATTTTACCACTCAACCTGGCTCATGGGACGTGATGAGCTTATAgcaccagggcacaaataatattgTCTTATTTTAGCTTCACTCATTGGATGGATGTGAGCCGCATACAGGCCGTTAGTAGAATTCCCACGTCGATGTTATGCTGGCAGGATAAGGCCATTAGGATGTATGACAGGCCTCAATCATTTTTTCACAAGACCTGAGAATAAAGTAATGTTTTAGTGGCTGGAGACAATTTGTATCATATACACTTTGAAGGTGCTGTTCTGATCTCAGTCCCATATCCGCATGTTTCATCCATCAGTCACATTTTAAAAAGGTATCAATCATTGATCAGAACACACCAGACCCTGCACAGATGACTGATTAGCACGAGGCAAAACAGAAGTACCTTAAAACCCGTATTACGGGTATATCAACGTTGAAGTGTAATTGGTCAGTCATAAGACCTGCAAATGAAATAAAGTTTAGCATCTtgatatatacacattatatccAAGGATTTACTTTGATCTTAAGTCCGATATCCGCATGTTTCATCCAGCAGTCACATAAAAGGTATCAGCATTGATCAGAACATACCAGGCCCTCTAAGATGAGTGATTTATCCCCCCCCAAAATGACAGTTCAGGATATACCTACAGATTGACATTCCCATCAAGGGACCTGGATTGGGCCATTACATCTTAAGTGTTAAGGCACACTTGTACCTCCATACCTGCAGAAATACCAAGTCAGACATTAGAAATTCAGCCGTGCACAAATTAAGCTCCAACAGCAGGATTTACATTGGTGGAACTATCAAAGCAACATTACTATGGTTCAAAGATGCAGCTAAATATCTGTAGGACAGTAGAGTGACTACCTCAGGCACAGAGAGGCTAGGACAGTCAAAGACTCCCCATTTCTCTGGCATGAACTTGGAGAACCAGAGGCTACAGACAAAGCCCGGGTCCTTAGGATAGCATGCGACCAGATAACACTTTGTTTTAAAAAATCCTTACCGCTGTTCAATCCCAAGGTGATTGGATCATCACCGCTACCATTTCAGTTGGTACGAGACCTGATGAGAAACAAAGTGACCTTAGTGGGCTGATCAATCTAGGTTCATTTCCATTCCAAAGCATGGATGTTTAATTCATTACTACTTTCAATAAACAGGCTCAGAAGTTGAA
>XM_021572292.2
TCGTCGCGCGTCGTTTTCTGTACTGCTCTGATACAAGATTTGGCCAGTGAACACGTGTTGGAACTTGGAGTGGATGGATAGTCAATTCTAATTAAGTCACCTTTTTTAAAAGTATTATTCAAAATTTGAAGGAAAAatttaaatgtgtatatatatcgaCAATTTAAAATCAATCAAGTCCAAATATTTACCATTTGACCGCCTTACACTATTTCGTTTTTGTGCCACAATGAAGTACATCCTGGTCACTGGTGGTGTCATCTCAGGCATCGGGAAGGGCATCATAGCCTCCAGTGTGGGAACCATCCTCAAGTCATGTGGTCTGCGTGTCACCGCCATCAAGATTGACCCCTACATCAACATAGATGCAGGGACCTTCTCTCCGTACGAGCATGgTGAGGTGTTTGTGCTGGACGATGGGGGTGAGGTGGATCTGGACCTGGGGAACTACGAGAGGTTCCTGGACATCAGACTGACCAAAGACAACAACCTGACCACCGGCAAAATCTACCAGTCTGTCATCaacaaggagaggaaaggagactaCCTGGGAAAGACCGTACAGGTGGTGCCCCACATCACTGATGCGATCCAGGAGTGGGTGATGCGTCAGGCCAGAGTACCTGTTGACGATGACGGTGTGGAGCCTCAGATCTGTGTCATCGAGCTAGGAGGCACTGTGGGAGACATCGAGAGCATGCCTTTCATCGAAGCCTTCAGGCAGTTCCAGTTCAAGGTGAAGAGGGAGAACTTCTGTAACATCCACGTCAGCCTGGTCCCACAGCCTAGTGCCACAGGAGAGCAGAAGACCAAACCCACTCAGAACAGTGTCAGAGAGCTCAGAGGACTCGGCCTGTCTCCTGATCTGATCATGTGTCGCTGCTCCACTTCCCTGGAGAACTCTGTTAAAGAGAAGATCTCCATGTTCTGTCATGTAGAACCTGAACAGgtgATCTGCGTGGCAGACGTGTCGTCCATCTACAGAGTGCCTCTGCTACTGGAGAACCAGGGGGTGGTGGGCTACTTCTGTCAGAGATTAGACCTTCCTATAGAGACCCGCCCCAGGAAGATGCTCACTAAGTGGAAGGAGATGTCTGACAGGTCAGACAGGCTCCTAGAGCAGTGTTCTATAGCCCTGGTGGGGAAATACACCAAGTTCACAGACTCCTACGCGTCAGTCATCAAAGCGCTAGAACACTCGGCCTTAGCCATCTGCCACAAACTGGATATCAAGtaTATTGACTCAGCAGACCTGGAGCCAAACACACTGAAGGAGGAGCCTGTGAAGTACCATGAGGCGTGGCAAAAACTCTGCAGTGCTGATGGCATCCTGGTACCTGGAGGATTTGGagtcagagggacagaggggaagatccacgccatcaactgggcacgCAAACAGAAGAAACCCTTCCTAGGTGTGTGTCTAGGGATGCAGCTGGCTGTGTGTGAGTTTGCCAGGAATGTGCTAGAATGGGAAGATGCCAACTCTACAGAGTTTCATCCCGAATCAAAGCATCCTGTTGTGATTGACATGCCAGAACACAATCCTGGGCAGATGGGTGGGACCATGAGGCTGGGAAAGAGACGGACCATTTTCAAGACCACCAACAGTATACTAAGAAGACTTTACGGAGATGCTGAGTACGTGGATGAGAGACACCGACATCGCTTTGAGGTGAACCCAGAGCTGAAGGATCACTTTGAGGGGAAAGGCTTTCACTTCGTGGGTCAAGACGTAGAAGGCGAGCGAATGGAAGTCATTGAGTTAGACGGAGTGCAGTATCATCCCGAGTTCACCTCTCGCCCCATCAAACCATCGCCTCCCTACTTTGGCCTCCTGCTGGCATCAGCCGGGAAACTACAGAGCTACCTACAGAAGGGCTGCTGTCTGTCTCCACGGGACACATACAGTGATCAGAGCGGCAGCAGCACCCCAGACTCAGAAATAGTTGAGTCCTCCACCTCACAGGATTGTGTGACTGAGGGAAAGGAACAATGAAGTGTTGAAAAAGGAAATTCCTTTCTAAACGGAGGATGAAGACAAGTGCTAAAATTAGCTCGTAAGATGTTTCCTGACCTGAATGGGTTATTTGGCATGTCTATATGCTCCCGACAACAGGCCGTCAAATGAAACTGACAGTTTCTTTACCCAGGATAACTCCCTTGAGATGAAACCaatggatggggagcgtctcaTTTCATTGAAACACTGAATGTcaaggaaccccccccccccaatatttgACAAGAAATGATGTCTGTACATTGCAGGGTTAAGTCATCTTTATTGCAGTAAACGGGCTTTACAAGTGGAGAGGAAATATTTTACCACTCAACCTGGCTCATGGGACGTGATGAGCTTATAgcaccagggcacaaataatattgTCTTATTTTAGCTTCACTCATTGGATGGATGTGAGCCGCATACAGGCCGTTAGTAGAATTCCCACGTCGATGTTATGCTGGCAGGATAAGGCCATTAGGATGTATGACAGGCCTCAATCATTTTTTCACAAGACCTGAGAATAAAGTAATGTTTTAGTGGCTGGAGACAATTTGTATCATATACACTTTGAAGGTGCTGTTCTGATCTCAGTCCCATATCCGCATGTTTCATCCATCAGTCACATTTTAAAAAGGTATCAATCATTGATCAGAACACACCAGACCCTGCACAGATGACTGATTAGCACGAGGCAAAACAGAAGTACCTTAAAACCCGTATTACGGGTATATCAACGTTGAAGTGTAATTGGTCAGTCATAAGACCTGCAAATGAAATAAAGTTTAGCATCTtgatatatacacattatatccAAGGATTTACTTTGATCTTAAGTCCGATATCCGCATGTTTCATCCAGCAGTCACATAAAAGGTATCAGCATTGATCAGAACATACCAGGCCCTCTAAGATGAGTGATTTATCCCCCCCCAAAATGACAGTTCAGGATATACCTACAGATTGACATTCCCATCAAGGGACCTGGATTGGGCCATTACATCTTAAGTGTTAAGGCACACTTGTACCTCCATACCTGCAGAAATACCAAGTCAGACATTAGAAATTCAGCCGTGCACAAATTAAGCTCCAACAGCAGGATTTACATTGGTGGAACTATCAAAGCAACATTACTATGGTTCAAAGATGCAGCTAAATATCTGTAGGACAGTAGAGTGACTACCTCAGGCACAGAGAGGCTAGGACAGTCAAAGACTCCCCATTTCTCTGGCATGAACTTGGAGAACCAGAGGCTACAGACAAAGCCCGGGTCCTTAGGATAGCATGCGACCAGATAACACTTTGTTTTAAAAAATCCTTACCGCTGTTCAATCCCAAGGTGATTGGATCATCACCGCTACCATTTCAGTTGGTACGAGACCTGATGAGAAACAAAGTGACCTTAGTGGGCTGATCAATCTAGGTTCATTTCCATTCCAAAGCATGGATGTTTAATTCATTACTACTTTCAATAAACAGGCTCAGAAGTTGAA
>XM_021572293.2
aagagacaacactacataaagagagacctaagacagacACCAACGTAGCAAGGcagtaacacatgacaacaaAGCAACATGGGAGCAGCACAAAAATTATTGTCGTATGCTGTGCCACAATGAAGTACATCCTGGTCACTGGTGGTGTCATCTCAGGCATCGGGAAGGGCATCATAGCCTCCAGTGTGGGAACCATCCTCAAGTCATGTGGTCTGCGTGTCACCGCCATCAAGATTGACCCCTACATCAACATAGATGCAGGGACCTTCTCTCCGTACGAGCATGgTGAGGTGTTTGTGCTGGACGATGGGGGTGAGGTGGATCTGGACCTGGGGAACTACGAGAGGTTCCTGGACATCAGACTGACCAAAGACAACAACCTGACCACCGGCAAAATCTACCAGTCTGTCATCaacaaggagaggaaaggagactaCCTGGGAAAGACCGTACAGGTGGTGCCCCACATCACTGATGCGATCCAGGAGTGGGTGATGCGTCAGGCCAGAGTACCTGTTGACGATGACGGTGTGGAGCCTCAGATCTGTGTCATCGAGCTAGGAGGCACTGTGGGAGACATCGAGAGCATGCCTTTCATCGAAGCCTTCAGGCAGTTCCAGTTCAAGGTGAAGAGGGAGAACTTCTGTAACATCCACGTCAGCCTGGTCCCACAGCCTAGTGCCACAGGAGAGCAGAAGACCAAACCCACTCAGAACAGTGTCAGAGAGCTCAGAGGACTCGGCCTGTCTCCTGATCTGATCATGTGTCGCTGCTCCACTTCCCTGGAGAACTCTGTTAAAGAGAAGATCTCCATGTTCTGTCATGTAGAACCTGAACAGgtgATCTGCGTGGCAGACGTGTCGTCCATCTACAGAGTGCCTCTGCTACTGGAGAACCAGGGGGTGGTGGGCTACTTCTGTCAGAGATTAGACCTTCCTATAGAGACCCGCCCCAGGAAGATGCTCACTAAGTGGAAGGAGATGTCTGACAGGTCAGACAGGCTCCTAGAGCAGTGTTCTATAGCCCTGGTGGGGAAATACACCAAGTTCACAGACTCCTACGCGTCAGTCATCAAAGCGCTAGAACACTCGGCCTTAGCCATCTGCCACAAACTGGATATCAAGtaTATTGACTCAGCAGACCTGGAGCCAAACACACTGAAGGAGGAGCCTGTGAAGTACCATGAGGCGTGGCAAAAACTCTGCAGTGCTGATGGCATCCTGGTACCTGGAGGATTTGGagtcagagggacagaggggaagatccacgccatcaactgggcacgCAAACAGAAGAAACCCTTCCTAGGTGTGTGTCTAGGGATGCAGCTGGCTGTGTGTGAGTTTGCCAGGAATGTGCTAGAATGGGAAGATGCCAACTCTACAGAGTTTCATCCCGAATCAAAGCATCCTGTTGTGATTGACATGCCAGAACACAATCCTGGGCAGATGGGTGGGACCATGAGGCTGGGAAAGAGACGGACCATTTTCAAGACCACCAACAGTATACTAAGAAGACTTTACGGAGATGCTGAGTACGTGGATGAGAGACACCGACATCGCTTTGAGGTGAACCCAGAGCTGAAGGATCACTTTGAGGGGAAAGGCTTTCACTTCGTGGGTCAAGACGTAGAAGGCGAGCGAATGGAAGTCATTGAGTTAGACGATCATCCGTATTTCGTAGGAGTGCAGTATCATCCCGAGTTCACCTCTCGCCCCATCAAACCATCGCCTCCCTACTTTGGCCTCCTGCTGGCATCAGCCGGGAAACTACAGAGCTACCTACAGAAGGGCTGCTGTCTGTCTCCACGGGACACATACAGTGATCAGAGCGGCAGCAGCACCCCAGACTCAGAAATAGTTGAGTCCTCCACCTCACAGGATTGTGTGACTGAGGGAAAGGAACAATGAAGTGTTGAAAAAGGAAATTCCTTTCTAAACGGAGGATGAAGACAAGTGCTAAAATTAGCTCGTAAGATGTTTCCTGACCTGAATGGGTTATTTGGCATGTCTATATGCTCCCGACAACAGGCCGTCAAATGAAACTGACAGTTTCTTTACCCAGGATAAC

Function

NR:

description
CTP synthase 1-like isoform X3

GO:

id name namespace
GO:0044210 'de novo' CTP biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0003883 CTP synthase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01937 pyrG, CTPS; CTP synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572291.2 False 3519 mRNA 0.47 17 48837413 48850951
XM_021572292.2 False 3501 mRNA 0.47 17 48837413 48850951
XM_021572293.2 True 2070 mRNA 0.51 17 48838752 48851235

Neighbor

gene id symbol gene type direction distance location
LOC110496408 rb39b coding downstream 2765 48829188 ~ 48834648 (-)
LOC118941242 NA coding downstream 9309 48827969 ~ 48828104 (-)
LOC110496407 LOC106588649 coding downstream 9331 48818937 ~ 48828082 (-)
LOC118941178 NA coding downstream 81544 48754530 ~ 48755869 (-)
LOC110496839 LOC106588648 coding downstream 106936 48729225 ~ 48730477 (-)
LOC110496413 LOC106588657 coding upstream 211496 49062731 ~ 49117216 (-)
LOC110496414 LOC106570277 coding upstream 272514 49123749 ~ 49131358 (-)
LOC110496416 LOC106588659 coding upstream 279693 49130928 ~ 49134380 (-)
LOC110496415 LOC106588660 coding upstream 285507 49134674 ~ 49146147 (-)
LOC110496840 LOC106588661 coding upstream 299050 49150285 ~ 49182882 (-)
G1557202 NA non-coding downstream 102625 48734557 ~ 48734788 (-)
G1557188 NA non-coding downstream 121646 48715563 ~ 48715767 (-)
G1557184 NA non-coding downstream 131402 48705790 ~ 48706011 (-)
G1557178 NA non-coding downstream 138800 48698360 ~ 48698613 (-)
G1557175 NA non-coding downstream 140698 48696495 ~ 48696715 (-)
G1557360 NA non-coding upstream 178534 49029769 ~ 49030016 (-)
G1557376 NA non-coding upstream 188945 49040180 ~ 49040452 (-)
G1557879 NA non-coding upstream 233437 49084672 ~ 49086021 (-)
G1557993 NA non-coding upstream 411422 49262657 ~ 49319527 (-)
G1556577 NA other downstream 480566 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 853804 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 891839 47890580 ~ 47945574 (-)
G1555543 NA other downstream 1290842 47543208 ~ 47546614 (-)
G1555168 NA other downstream 1924498 46911977 ~ 46912915 (-)
G1558535 NA other upstream 1116661 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 1171856 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 1505034 50256021 ~ 50359132 (-)
G1558916 NA other upstream 1585762 50436997 ~ 50437459 (-)
G1559205 NA other upstream 1771856 50623091 ~ 50623983 (-)

Expression


Co-expression Network