LOC110496416 (LOC106588659)


Basic Information

Item Value
gene id LOC110496416
gene name LOC106588659
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49130928 ~ 49134380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952987.1
CTGATTGGTTAATTGGATAATTGGCTAACGTTTTTTGCTAGTGAGCTGAAATGTGGTGATCTGTCAAGTGTTGCACCTTTCAATCTTATGGGATAGTTGTAATGATCAAATCTAACTAAAATCCCTCTTCCAACTACAAGTGGGGTCAAGTATACAACAGGGGCTCATATATGGGAAGTGGATACAGGTACAATCAGTCCACAGGTGGATTTACCACGTTCCAGTCAGGACAGAAGACAACCAAGTGGTCAGTACTTCAGATGATGCCGTGCACTGTGTCCCAACTGCTGTCTGCCATGGCTGTCGGGGAAGTCTTCAGAGTTGGTGACATTGAGTTCAACCAGGTATCTGTGGTGGGTATCGTCAGGAGAACGGTTCCCTCAGTAAACAATGTCTTGTACTCCGTGGACGACATGACTGGACCCCCATTAGGCGTGAAGCTCTGGGTGGACACTGCAGATCCTGGTGTGGACAGTACTTTTGTATCCCCAGGGACTTATGTCAAGGTCTCTGGAAGCCTGCGTATCATTCAGGGCCAAAGATCATTGGTGGCTTTCAACCTCTGTTGCCTTGAGGACCTGAATGAGATCACCTCTCACATGCTGGAGGTAGTGCAGGCCCACATGCAGCACAACAGGAAcctttgtggtggtggtggtaatccTGGAGATGGAGACGCATCAACCTACGGGCTGAGTGCCAGTCAGAGCCAGGTGTTGAACCTGATCAGGAGTTGCTCAGACTCACAGCCCAGGGGCATCAGTCTAGAGGAGCTAGACATTAAGCTGGGGTACCTCAGCATGACTGCCATCAGCCAGACCTTGGAGTTTCTTATCAGAGAAGGCCACATCTTCTCCACCATCGACGACAAGCATTTCAGGGCCACTACTGGCtaggccctcaaactcaactctggaccttgaaACCAGTCCACTGCatgttttcattgttcccctctaaccagTTACTGATTAGGTGTGACTGCAATTCAGGTAGAACAGAACCAGCAGGTTGAAgacctcatagggtaagagttgTTACCCCTGGGCTAGAGAATGTCTTCTGTTGTTTAAGGTCAACTTACATCAATAGCTATAGgatgtttttaaataaaaagacacaacattttGGTTTATCAACATGCATGTCTGTTACTGTTTATGATTTGTTATTTATATGATTTACTCTCAAATATGGTGACTCTGTGGCCTAAttttattttgtatagttttgttTTGAGGTCCTCTGGTATGTGACAGCTGATGTACAGTGTAAAATGTTGATTGGATAAATGATTGCTTGGTGAAATGTCATTATGCAATGAAAATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952987.1 True 1330 mRNA 0.45 8 49130928 49134380

Neighbor

gene id symbol gene type direction distance location
LOC110496413 LOC106588657 coding downstream 13712 49062731 ~ 49117216 (-)
LOC110496409 LOC106588651 coding downstream 279693 48837413 ~ 48851235 (-)
LOC110496408 rb39b coding downstream 296280 48829188 ~ 48834648 (-)
LOC118941242 NA coding downstream 302824 48827969 ~ 48828104 (-)
LOC110496407 LOC106588649 coding downstream 302846 48818937 ~ 48828082 (-)
LOC110496415 LOC106588660 coding upstream 2362 49134674 ~ 49146147 (-)
LOC110496840 LOC106588661 coding upstream 15905 49150285 ~ 49182882 (-)
LOC110496418 LOC106588662 coding upstream 52292 49186672 ~ 49200574 (-)
LOC110496422 LOC106588665 coding upstream 66846 49201226 ~ 49203888 (-)
LOC110496421 LOC106588664 coding upstream 69605 49203985 ~ 49209483 (-)
G1557879 NA non-coding downstream 44907 49084672 ~ 49086021 (-)
G1557376 NA non-coding downstream 90476 49040180 ~ 49040452 (-)
G1557360 NA non-coding downstream 100912 49029769 ~ 49030016 (-)
G1557202 NA non-coding downstream 396140 48734557 ~ 48734788 (-)
G1557188 NA non-coding downstream 415161 48715563 ~ 48715767 (-)
G1557993 NA non-coding upstream 128277 49262657 ~ 49319527 (-)
G1558076 NA non-coding upstream 342972 49477352 ~ 49477569 (-)
G1558118 LOC106582599 non-coding upstream 409933 49544313 ~ 49544584 (-)
G1558134 NA non-coding upstream 446594 49580974 ~ 49581482 (-)
G1556577 NA other downstream 774081 48356613 ~ 48356847 (-)
LOC110496401 LOC106588640 other downstream 1147319 47982726 ~ 47986560 (-)
LOC110496837 LOC106588626 other downstream 1185354 47890580 ~ 47945574 (-)
G1555543 NA other downstream 1584357 47543208 ~ 47546614 (-)
G1555168 NA other downstream 2218013 46911977 ~ 46912915 (-)
G1558535 NA other upstream 833516 49967896 ~ 49968608 (-)
LOC110496434 LOC106588680 other upstream 888711 50023087 ~ 50034167 (-)
LOC110496438 LOC106588686 other upstream 1221889 50256021 ~ 50359132 (-)
G1558916 NA other upstream 1302617 50436997 ~ 50437459 (-)
G1559205 NA other upstream 1488711 50623091 ~ 50623983 (-)

Expression


Co-expression Network