XLOC_003432


Basic Information

Item Value
gene id XLOC_003432
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23895529 ~ 23913499 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008604
gacatcaCTAAGCATGACATACTGCAGTTCAGCTGCACTTTCCATGACTGACTGCCTAAATTACGATAAATGTATAGGGAAAATGAATGCCAGCGCTCGTAATAAGAGTGTGAGATCACAGGAATGAGCATTAATCAGAGACATGCGGCGTTTGTCACCCACTGATCATTAATCAAGAAGGAAAAACAGAAAGCAGCGCATCTGACCGACAGACTAATACCATGCATGATGGAGACCACGTCCATCCTTCGGTCGGTCCATTCAAACGTCCCACGTCTGAGGAGGAAgtaggaggaggagaaggagggggGTTTCTTTCCCTCAGGCCAAATGAAAGCAGATCAGACTGAACAGTCCCAGCTGGCACAATATGGGTGGATGCCACTGGAAGTCAATTAGCTCACATGTCAGAGAGAAACGCCTCCCTCCTCCTTTCTTCACCCGTCCCGTCGTGACAGTGTGGTGCCATCGAAGTAGTGAAGAGCGACTAATCACCCGCTGAAGGGAAGGGGgtctaaaataaatacatatgctattaataattcatttaggGCCCTCAAAGTCAGAGATATTAATCTTTCAAATACGCATTTCATTACTTGCGCATGCCGTCATCTGGTGTTTTCCAAGTCAGCAGATAATTGGGTTTTCTGATGCGAGACGGCATCATTTATTTCTACCTGTGTGACTTTTTATCACTGCATTCAGTTGTTTTGATTTTTAGTtgtgtaaattatttttataagctGTTGGAAAATGTAGACGGTACGCATTTGGCCTTTTCACACTACACTTAATGAGTTATCATCATT
>TCONS_00006707
GCATGACATACTGCAGTTCAGCTGCACTTTCCATGACTGACTGCCTAAATTACGATAAATGTATAGGGAAAATGAATGCCAGCGCTCGTAATAAGAGTGTGAGATCACAGGAATGAGCATTAATCAGAGACATGCGGCGTTTGTCACCCACTGATCATTAATCAAGAAGGAAAAACAGAAAGCAGCGCTGTTTTAACGCAGGTGTGTGCTGACTCCACGTCCCATCACGTGCTCAGTGCTGGCAGCGCCCCGGCGAGCCGTCACGATATGCCCCGTAGGCAGATGGCATTACGACTGCCAGCCCGCGCATCTTCAATTCCCCGCGCAGGGATTTGCTGGTCTATAGCAGGCAGCCTGGCCTGACACTTTCTAAAGATAAAGATGCTGAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008604 False 812 lncRNA 0.44 3 23895529 23902690
TCONS_00006707 True 391 lncRNA 0.50 3 23895540 23913499

Neighbor

gene id symbol gene type direction distance location
XLOC_003431 nfasca coding upstream 10724 23704410 ~ 23884805 (+)
XLOC_003430 NA coding upstream 297858 23594349 ~ 23597671 (+)
XLOC_003429 si:ch73-21d24.1 coding upstream 323936 23569869 ~ 23571593 (+)
XLOC_003428 BX571675.1 coding upstream 498144 23397270 ~ 23397385 (+)
XLOC_003427 csf1a coding upstream 598337 23265157 ~ 23297192 (+)
XLOC_003433 cntn2 coding downstream 19517 23933016 ~ 23987682 (+)
XLOC_003434 chia.1 coding downstream 79799 23993298 ~ 24000171 (+)
XLOC_003435 chia.2 coding downstream 88494 24001993 ~ 24008739 (+)
XLOC_003436 NA coding downstream 102336 24015835 ~ 24024576 (+)
XLOC_003437 ovgp1 coding downstream 114216 24027715 ~ 24032190 (+)
XLOC_003369 CR854846.2 misc upstream 7772447 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 11183533 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 11201266 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 11209930 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 11215501 12679732 ~ 12680028 (+)
XLOC_003426 NA non-coding upstream 968341 22920469 ~ 22927188 (+)
XLOC_003425 CU861893.1 non-coding upstream 1181398 22714015 ~ 22714131 (+)
XLOC_003423 BX537143.1 non-coding upstream 1295936 22596726 ~ 22599593 (+)
XLOC_003440 NA non-coding downstream 147657 24061156 ~ 24083588 (+)
XLOC_003441 FP102969.1 non-coding downstream 202584 24116083 ~ 24151217 (+)
XLOC_003442 NA non-coding downstream 206792 24120291 ~ 24310645 (+)
XLOC_003443 NA non-coding downstream 262919 24176418 ~ 24177651 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_01510773_01517931 NA coding CI01000058 null 1510350 ~ 1519182 (-)