XLOC_003436


Basic Information

Item Value
gene id XLOC_003436
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24015835 ~ 24024576 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008605
ATGATGGAGAACCTGAGATGAATTTAAGAAAAGAAGCCTGAACGATATCAATGATTTGCTGACAAACATCCAAAACCCCAAGCATGATTCTTCAGAATACAGTTAAACAAtaagaggcGTTTTTTCCATACAGTCCATACTGTTGACATCATCAGAAGGGGCCCTGAAGACCCTGCAGCCTGAAATATAAGCTGTAATGTCCATGTGAACACAAAGAGTAAATCTAGAGCCAGTATCAAAAGGTGCAGTCTGGAGCCCGGGGAGGTTTTGCGAATTTCAAGAATGGTTAGTAATACCTCATCCAAGATGTCTCAAGCTGACAGGGATTATCCTGTGCACCCAAAAATACACACCCTGATAATGTCAATAATATTGGATAACAGGAAGTGTTCATGAACATAGCTACAAGCTGAAGTTATGCAAGAATGTCTGAGTGtcaaaaaatacaatgaaatgttaaatttttatAGCATCTGCTTTGCTGTCAGgaacattattaaaactatttttaatgattaataataagaacattgcaatatcaatattTTGGCAGAATGTAATTCAGTGTAACACTGTTTTAAATCAGCATAacatatttttatgcaaaaatggAAACATACTTGCTGACCTGTACTTGTATGAAACTGTAtgcaat
>TCONS_00006714
GGTTCCTTTAATCCTATCTGTGCAGAAAAGAAGCCTGAACGATATCAATGATTTGCTGACAAACATCCAAAACCCCAAGCATGATTCTTCAGAATACAGTTAAACAAtaagaggcGTTTTTTCCATACAGTCCATACTGTTGACATCATCAGAAGGGGCCCTGAAGACCCTGCAGCCTGAAATATAAGCTGTAATGTCCATGTGAACACAAAGAGTAAATCTAGAGCCAGTATCAAAAGGTGCAGTCTGGAGCCCGGGGAGGTTTTGCGAATTTCAAGAATGGACTGGCACATGACTGTTGCCCGTGTCTGAATTAAACACATCAAAACAGACTACAAAGAGCCAATATAACCCTATCTGACTGTACAGTCACCTGAGGTAACTATCTTTTGTAACTGAGTACATGCTGTCATTAATAGTAGCTTGCAGTTACTGATAAATGTCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008605 False 655 lncRNA 0.36 4 24015835 24022124
TCONS_00006714 True 446 lncRNA 0.41 4 24018401 24024576

Neighbor

gene id symbol gene type direction distance location
XLOC_003435 chia.2 coding upstream 7096 24001993 ~ 24008739 (+)
XLOC_003434 chia.1 coding upstream 15664 23993298 ~ 24000171 (+)
XLOC_003433 cntn2 coding upstream 28153 23933016 ~ 23987682 (+)
XLOC_003432 NA coding upstream 102336 23895529 ~ 23913499 (+)
XLOC_003431 nfasca coding upstream 131030 23704410 ~ 23884805 (+)
XLOC_003437 ovgp1 coding downstream 3139 24027715 ~ 24032190 (+)
XLOC_003438 zc3h11a coding downstream 9769 24034345 ~ 24044586 (+)
XLOC_003439 maf1 coding downstream 21603 24046179 ~ 24056609 (+)
XLOC_003440 NA coding downstream 36580 24061156 ~ 24083588 (+)
XLOC_003441 FP102969.1 coding downstream 91507 24116083 ~ 24151217 (+)
XLOC_003369 CR854846.2 misc upstream 7892753 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 11303839 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 11321572 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 11330236 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 11335807 12679732 ~ 12680028 (+)
XLOC_003430 NA non-coding upstream 418164 23594349 ~ 23597671 (+)
XLOC_003428 BX571675.1 non-coding upstream 618450 23397270 ~ 23397385 (+)
XLOC_003426 NA non-coding upstream 1088647 22920469 ~ 22927188 (+)
XLOC_003425 CU861893.1 non-coding upstream 1301704 22714015 ~ 22714131 (+)
XLOC_003442 NA non-coding downstream 95715 24120291 ~ 24310645 (+)
XLOC_003443 NA non-coding downstream 151842 24176418 ~ 24177651 (+)
XLOC_003444 AL831791.1 non-coding downstream 154247 24178823 ~ 24178938 (+)

Expression


Co-expression Network