G1514284 (zranb3)


Basic Information

Item Value
gene id G1514284
gene name zranb3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8604000 ~ 8604228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1732934
CTCTGGCCGTCCCAGGGCCGGGGTGCCCGTCAGTAGGATGGCCCGCTTGGCGTTCTGGATGAGTGGTACCAGTATCTTAGACCTGGCTGCGTTCCTGGACTTGAGGTAGTGGGATtcatccaccaccaccacattaAACCTCTGTCTGGTCAGAGCCTCCACCAGGGGGCGTGCGTCTGTGGTGAGCAGCCCATAACCCAACACTGTTACCTTACTGCTACTGATCCCC

Function

symbol description
zranb3 Predicted to enable endodeoxyribonuclease activity. Predicted to be involved in DNA repair; replication fork processing; and replication fork protection. Predicted to be active in nuclear replication fork. Orthologous to human ZRANB3 (zinc finger RANBP2-type containing 3).

NR:

description
DNA annealing helicase and endonuclease ZRANB3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1732934 True 229 lncRNA 0.59 1 8604000 8604228

Neighbor

gene id symbol gene type direction distance location
LOC118936321 LOC106575888 coding upstream 92804 8506139 ~ 8511196 (+)
LOC110528849 LOC105022557 coding upstream 97746 8498352 ~ 8506254 (+)
LOC110528836 chsta coding upstream 124639 8475052 ~ 8479361 (+)
LOC118941085 LOC106575914 coding upstream 131328 8469399 ~ 8472672 (+)
LOC118941084 NA coding upstream 640920 7961999 ~ 7965688 (+)
LOC110495394 LOC106574832 coding downstream 20023 8623967 ~ 8676626 (+)
LOC110495395 LOC106574852 coding downstream 73269 8677497 ~ 8682383 (+)
LOC110495396 rnd3 coding downstream 114246 8718474 ~ 8744053 (+)
LOC110495389 mmadhc coding downstream 219301 8823529 ~ 8835425 (+)
LOC118941058 NA coding downstream 243762 8847990 ~ 8852444 (+)
G1514278 NA non-coding upstream 19764 8583952 ~ 8584236 (+)
G1514272 NA non-coding upstream 28979 8574791 ~ 8575021 (+)
G1514255 NA non-coding upstream 78513 8522991 ~ 8525487 (+)
G1514254 NA non-coding upstream 82305 8521407 ~ 8521695 (+)
G1514253 NA non-coding upstream 83246 8520515 ~ 8520754 (+)
G1514285 NA non-coding downstream 1380 8605608 ~ 8605809 (+)
G1514286 NA non-coding downstream 6668 8610896 ~ 8611254 (+)
G1514287 NA non-coding downstream 12409 8616637 ~ 8616844 (+)
G1514288 NA non-coding downstream 12916 8617144 ~ 8617353 (+)
G1514289 NA non-coding downstream 13215 8617443 ~ 8617664 (+)
G1514274 NA other upstream 27175 8576493 ~ 8576825 (+)
G1514180 NA other upstream 191201 8347227 ~ 8412799 (+)
G1514045 LOC106574979 other upstream 588970 8013860 ~ 8015030 (+)
LOC110511355 LOC106592813 other upstream 802942 7758036 ~ 7801058 (+)
G1515005 cbs other downstream 396170 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1370300 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1565874 10170102 ~ 10171956 (+)

Expression


Co-expression Network