G1514951


Basic Information

Item Value
gene id G1514951
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8872182 ~ 8873111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1733793
ccttagccgtggtatattggccctataccacaccccctcgggccttattgcttaaatagagCACAGCTTGTTTTGTAAGTgaattaaaacatttacattctAACTTAGCTTATTTTAAGAATAAAGTGTCCCTAAAAGCATAGGTAAACCATGATCAATATGCTTATCAATACAACAGAGCATAAACAACGTGCTGATCCTAACTGAAGTAAAGGAATGTGGTGCAGAACACAGTGCAGGTGGGCGATCATTCCAGTCTGAACTTTGAACTTCTTCAGGTGAACTGTCATACATTCCTAATGCGGTCGGAAAAGCAAAGGATTCTTCAACAACAAGTAAAGATCATGTTTACACGACTGTGACTGTCATATGCTATACAACGTGGTTCTTAGTGATGGCATATCACTCTCTGTTATATACATGTAACCATCTATCAGCACACAGCTTCCCCTCCAAGACAACACTACAATTAAATATATATGTACATGAACAacggaaaagagagagacatacgGTATGTAGAGTAGACACAGAGTAGAgaggatgGGGGCAGAGGGGTCTTACTCCTAGAcccagaggaaggacaggaggatgAGGGCAGAGGGGTCTTACTCCTAGAcccagaggaaggacaggaggatgAGGACAGAGGGGTCTTACTCCTAGAcccagaggaaggacaggagaggatGAGGGCAGAGGGGTCTTACTCCTAGACCCAGAGGAAGCACAGGAGGATGAGGGCAGAGGGGTCTTACTCCTAGAcccagaggaaggacaggaggatgAGGGCAGAGGGGTCTTACTCCTAGACCCAGAGGAAGCACAGGAGGATGAGGGCAGAGGGGTCTTACTCCTAGACCCAGAGGAAGGACAATAGGA
>TU1733794
ccttagccgtggtatattggccctataccacaccccctcgggccttattgcttaaatagagCACAGCTTGTTTTGTAAGTgaattaaaacatttacattctAACTTAGCTTATTTTAAGAATAAAGTGTCCCTAAAAGCATAGGTAAACCATGATCAATATGCTTATCAATACAACAGAGCATAAACAACGTGCTGATCCTAACTGAAGTAAAGGAATGTGGTGCAGAACACAGTGCAGGTGGGCGATCATTCCAGTCTGAACTTTGAACTTCTTCAGGTGAACTGTCATACATTCCTAATGCGGTCGGAAAAGCAAAGGATTCTTCAACAACAAGTAAAGATCATGTTTACACGACTGTGACTGTCATATGCTATACAACGTGGTTCTTAGTGATGGCATATCACTCTCTGTTATATACATGTAACCATCTATCAGCACACAGCTTCCCCTCCAAGACAACACTACAATTAAATATATATGTACATGAACAacggaaaagagagagacatacgGTATGTAGAGTAGACACAGAGTAGAGTGGAAGGGGGCAGAGGGGTCTTACTCCTAGACCCAGAGGAAGCACAGGAGGATGAGGGCAGAGGGGTCTTACTCCTAGAcccagaggaaggacaggaggatgAGGGCAGAGGGGTCTTACTCCTAGACCCAGAGGAAGCACAGGAGGATGAGGGCAGAGGGGTCTTACTCCTAGACCCAGAGGAAGGACAATAGGA

Function

NR:

description
PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1733793 False 882 lncRNA 0.46 2 8872182 8873111
TU1733794 True 736 lncRNA 0.44 2 8872182 8873111

Neighbor

gene id symbol gene type direction distance location
LOC118941058 NA coding upstream 19738 8847990 ~ 8852444 (+)
LOC110495389 mmadhc coding upstream 36757 8823529 ~ 8835425 (+)
LOC110495396 rnd3 coding upstream 128129 8718474 ~ 8744053 (+)
LOC110495395 LOC106574852 coding upstream 189799 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 coding upstream 195556 8623967 ~ 8676626 (+)
LOC110495382 orc4 coding downstream 55822 8928933 ~ 8933881 (+)
hsf2bp hsf2bp coding downstream 62084 8935195 ~ 8947637 (+)
LOC110496912 NA coding downstream 75750 8948861 ~ 8950192 (+)
LOC110496974 LOC106574764 coding downstream 77265 8950376 ~ 8968786 (+)
LOC110527296 LOC106575803 coding downstream 150005 9023116 ~ 9030662 (+)
G1514949 NA non-coding upstream 1353 8870142 ~ 8870829 (+)
G1514947 NA non-coding upstream 3063 8868841 ~ 8869119 (+)
G1514920 NA non-coding upstream 8586 8863328 ~ 8863596 (+)
G1514911 NA non-coding upstream 27556 8842854 ~ 8844626 (+)
G1514910 NA non-coding upstream 29434 8842449 ~ 8842748 (+)
G1514955 NA non-coding downstream 3972 8877083 ~ 8877916 (+)
G1514967 NA non-coding downstream 34811 8907922 ~ 8908881 (+)
G1514968 NA non-coding downstream 37041 8910152 ~ 8912132 (+)
G1514971 mbd5 non-coding downstream 44899 8918010 ~ 8918251 (+)
G1514996 NA non-coding downstream 112068 8985179 ~ 8987654 (+)
G1514274 NA other upstream 295357 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 367846 8498352 ~ 8506254 (+)
G1514180 NA other upstream 459383 8347227 ~ 8412799 (+)
G1515005 cbs other downstream 127287 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1101417 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1296991 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1446199 10310107 ~ 10327138 (+)
G1516637 NA other downstream 2143654 11016765 ~ 11017089 (+)

Expression


Co-expression Network