G1514968


Basic Information

Item Value
gene id G1514968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8910152 ~ 8912132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1733819
GAAGGCCCAAACCGACAGGGCTCGGCCTGAAGGCCCAAACCATCACTTCTTTCTTTCCATACTAATATGACATACTGCCCATTATGCATTTTAAACGTTTCTTCTATCCTTTAAACTATTATTGTACTATCTGCACTGGTTTTAATGAATCATTTAGGTTGTTAAAAGTTGAttctgaattattattattttttttaaagatcgcATGCTGCCTAAATATATAGTGAAGCATTTTCAGACCTTATGCTTATAAATAAGCATGGTCCCCAGAGACTGGAGATACGCAACCTTAACTTTCTGGAAGGAGGCAGTCAATGACCTCTTCAGGACATGGTCTACTGTAACAAACACGACAGAAGAGATAGCTAGCAGAAGGGAAAAACACAGTAGGACACAACGTCACGGGATCCAAAAAGAACACATTTGAAATCAGACTGGAAAACAGTCAGGTTAATGGCTAAACTGAATACAGCATATTTCTGTGTCAAATAAACACGTAAGGCTTTGAGTTTATAACTCTCGGTTGTATTATTGCCATCTAGAATATTGTAAAGcttaaaataaatatgaaatacTGTACATAAATAATTTATAACAAATAAACTACACATAAGGCCCCTAAATTGTAGGATGAACTCTTTTCCACCATTTTACCTCAGGCAGTTAGTGTTATTTTCACAATCCACTCTTACGTCATATGCTTGTGGTTGGTTACGTGATCTAAAGCTATAGCTGTGTGATAAAATGATGACACTGTTTGAAAATGATATTAAGAAAAATAAAATCACATCAAAAAGAACATTTAAATGAGGAAAAAACAGCTGACTGGTATTGGACAACAGTCTGTTGGTTTTAGTAGGTTGAGATCCTGGAATTAGAAGGATGCTTCATTCCAATCATCCTGTTTCTATGGTAACCCTAGAAACAGAAAGCCTTTCAGCTGGTAAAGTTCACTCTGTTTTTAAAACGCATAAAATGAACAAACACTTAGTGGTGTTGAAGTGAAGCCCGTTTCTCCTGGGTCTGGATTCAGAAAGCGTCTCAGAGTTGGGGGTGCTGAACTAGGATCAGTCTCGCCCCTCTTAGATCCTAATTAAGATGATGTggacaaaggggggagggggggggcccTGATCCTACTGCTACTGCCAGTGATGATCTAGTAGCAGGCCCCCCTCTGTATATGTCATCTTATTCATTATAATATTAAAAGTGAAACTGATCCgtgatcagcactcctactccccCCGAATGCTTTCTGAATACAGACCCTGCTGGTCAATCCAATAAACAGCAGGTCTATAACATCACCATGTAAAAGCTTCCGGCTGTATCTCGTCTTTCCATGTCCCTTGCATACAGTCAGAACGTCTGCGTGTGCTGAATAAAAACCAGGACATCGGTgcacttctgctgctgctgctttgtACAATACAAGTTCACATGTGCATTATTAAGTATGTTGTACATTACCAGTGTACAATATTTACATACGTTTttttaatattcatgaaatcttCCGTATTACCTATATACATGTTGAAAATGTATCAGAAATATTTGGACTGTCTATTTtctttaaaatgtaatatttttcttCTAtttatcagttttttttttaaatacgttATTCTAGAAAAAATAGTTGTCATTCAGCTAGCTGTAGACAAATTACAACCGTTGTTTTTTAACAGTTGAAATTCAAAACTGTCATATTTTTGTTTGTCTTTTCCAGGACTTTCAATGTCAGTCAGCTAGGGAGGTCGTGGGACGATAATGTACCACGACTATCCATATTGTAGCACCTGGTTGGAGTTCAAAGGTCGCGGCGGGGGCGGTCTGAACCGTTGTTCCAAGGCTGGGCACTGGCTAGATACTGGACTGTCATTAGCTGACCAAACACATTCAACGTTATCTGGAGATCTTTCTCCTCTTGGGCTTGGGCAGcttcacctgtctgtctctggaaGGGATCTGATGA
>TU1733818
aagatcgcATGCTGCCTAAATATATAGTGAAGCATTTTCAGACCTTATGCTTATAAATAAGCATGGTCCCCAGAGACTGGAGATACGCAACCTTAACTTTCTGGAAGGAGGCAGTCAATGACCTCTTCAGGACATGGTCTACTGTAACAAACACGACAGAAGAGATAGCTAGCAGAAGGGAAAAACACAGTAGGACACAACGTCACGGGATCCAAAAAGAACACATTTGAAATCAGACTGGAAAACAGTCAGGTTAATGGCTAAACTGAATACAGCATATTTCTGTGTCAAATAAACACGTAAGGCTTTGAGTTTATAACTCTCGGTTGTATTATTGCCATCTAGAATATTGTAAAGcttaaaataaatatgaaatacTGTACATAAATAATTTATAACAAATAAACTACACATAAGGCCCCTAAATTGTAGGATGAACTCTTTTCCACCATTTTACCTCAGGCAGTTAGTGTTATTTTCACAATCCACTCTTACGTCATATGCTTGTGGTTGGTTACGTGATCTAAAGCTATAGCTGTGTGATAAAATGATGACACTGTTTGAAAATGATATTAAGAAAAATAAAATCACATCAAAAAGAACATTTAAATGAGGAAAAAACAGCTGACTGGTATTGGACAACAGTCTGTTGGTTTTAGTAGGTTGAGATCCTGGAATTAGAAGGATGCTTCATTCCAATCATCCTGTTTCTATGGTAACCCTAGAAACAGAAAGCCTTTCAGCTGGTAAAGTTCACTCTGTTTTTAAAACGCATAAAATGAACAAACACTTAGTGGTGTTGAAGTGAAGCCCGTTTCTCCTGGGTCTGGATTCAGAAAGCGTCTCAGAGTTGGGGGTGCTGAACTAGGATCAGTCTCGCCCCTCTTAGATCCTAATTAAGATGATGTggacaaaggggggagggggggggcccTGATCCTACTGCTACTGCCAGTGATGATCTAGTAGCAGGCCCCCCTCTGTATATGTCATCTTATTCATTATAATATTAAAAGTGAAACTGATCCgtgatcagcactcctactccccCCGAATGCTTTCTGAATACAGACCCTGCTGGTCAATCCAATAAACAGCAGGTCTATAACATCACCATGTAAAAGCTTCCGGCTGTATCTCGTCTTTCCATGTCCCTTGCATACAGTCAGAACGTCTGCGTGTGCTGAATAAAAACCAGGACATCGGTgcacttctgctgctgctgctttgtACAATACAAGTTCACATGTGCATTATTAAGTATGTTGTACATTACCAGTGTACAATATTTACATACGTTTttttaatattcatgaaatcttCCGTATTACCTATATACATGTTGAAAATGTATCAGAAATATTTGGACTGTCTATTTtctttaaaatgtaatatttttcttCTAtttatcagttttttttttaaatacgttATTCTAGAAAAAATAGTTGTCATTCAGCTAGCTGTAGACAAATTACAACCGTTGTTTTTTAACAGTTGAAATTCAAAACTGTCATATTTTTGTTTGTCTTTTCCAGGACTTTCAATGTCAGTCAGCTAGGGAGGTCGTGGGACGATAATGTACCACGACTATCCATATTGTAGCACCTGGTTGGAGTTCAAAGGTCGCGGCGGGGGCGGTCTGAACCGTTGTTCCAAGGCTGGGCACTGGCTAGATACTGGACTGTCATTAGCTGACCAAACACATTCAACGTTATCTGGAGATCTTTCTCCTCTTGGGCTTGGGCAGcttcacctgtctgtctctggaaGGGATCTGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1733819 False 1981 lncRNA 0.39 1 8910152 8912132
TU1733818 True 1784 lncRNA 0.39 1 8910349 8912132

Neighbor

gene id symbol gene type direction distance location
LOC118941058 NA coding upstream 57708 8847990 ~ 8852444 (+)
LOC110495389 mmadhc coding upstream 74727 8823529 ~ 8835425 (+)
LOC110495396 rnd3 coding upstream 166099 8718474 ~ 8744053 (+)
LOC110495395 LOC106574852 coding upstream 227769 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 coding upstream 233526 8623967 ~ 8676626 (+)
LOC110495382 orc4 coding downstream 16801 8928933 ~ 8933881 (+)
hsf2bp hsf2bp coding downstream 23063 8935195 ~ 8947637 (+)
LOC110496912 NA coding downstream 36729 8948861 ~ 8950192 (+)
LOC110496974 LOC106574764 coding downstream 38244 8950376 ~ 8968786 (+)
LOC110527296 LOC106575803 coding downstream 110984 9023116 ~ 9030662 (+)
G1514967 NA non-coding upstream 1271 8907922 ~ 8908881 (+)
G1514955 NA non-coding upstream 32236 8877083 ~ 8877916 (+)
G1514951 NA non-coding upstream 37041 8872182 ~ 8873111 (+)
G1514949 NA non-coding upstream 39323 8870142 ~ 8870829 (+)
G1514947 NA non-coding upstream 41033 8868841 ~ 8869119 (+)
G1514971 mbd5 non-coding downstream 5878 8918010 ~ 8918251 (+)
G1514996 NA non-coding downstream 73047 8985179 ~ 8987654 (+)
G1514998 NA non-coding downstream 77521 8989653 ~ 8990784 (+)
G1515006 NA non-coding downstream 91076 9003208 ~ 9004114 (+)
G1515044 NA non-coding downstream 168648 9080780 ~ 9081368 (+)
G1514274 NA other upstream 333327 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 405816 8498352 ~ 8506254 (+)
G1514180 NA other upstream 497353 8347227 ~ 8412799 (+)
G1515005 cbs other downstream 88266 9000398 ~ 9003126 (+)
G1515776 NA other downstream 1062396 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1257970 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1407178 10310107 ~ 10327138 (+)
G1516637 NA other downstream 2104633 11016765 ~ 11017089 (+)

Expression


Co-expression Network