G1515837


Basic Information

Item Value
gene id G1515837
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10134606 ~ 10137597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735011
gactggatggacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatgggctcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatggatgcttgtcagactcatggtgctccacagagtgGCCGACGGAAACTAGATGGAcgttaatttaatttattgaacAGATTGTAAATGATGTAAACTATTGTCTTCACATAAGGACATGTTTAAACAAATTGTGGCAATATAGAAGTATTTTGTATTATATTTCCTACTTCTCATTCTAGACTCATTGCAGGAGATTTCCCCTGAAGTTGGAACTTTTTAAAAGGTGTTTTTAAattatctggggggggGGAATAAAGATGGAGAATTGCTATTTGTCATTTTATTTAAAGTGGCCTTCCTAAAAGGACATTTCACTCTTGAAATTTTTATGGACACAGTAACGCCTTGTTAGGATGAAGGAATTTCACTACCCATTTATGATTATGTGCAGATTTTTAATATGAAGTCAGTTTAAAAAGCCCAGATGAATTGAGGTGTCACCACTCAATGTTTTACTTTTCCTGTTAAATTGATATCCCAAGAACACAAAGGGTGAAAGTGAGGAAAATAGTGTTAACTGAGTTGGTCTGATTGGAATCCAGAATTTCATCGTTCTCCCCCTTGCTTGACGAGCaatacagaccccccccccccaccacttgTGCTGTGATtacttacctggaccacctacTGAGACTTGAGTGCCTCTTTAAAAGGTGCAATTACCACTTTATAGACCACTGTTGTAGCCTCTTCTGCCTCCATGTGGTGGGTTCTAGTAATTACAGCAGCACATTGTCCTTTCACTATCTTGTTTTTTCCCTGCAAATGTGTTAACCATAATCTACCTGTAGCATCCCATTTATCGAATGGCCTGTGTCTTATATACCTAATAAATCAACTGAATGTGTTAAACTATGTAGCCTGTAACCCAGGTAGAGAATAATAAACGTGTGAATCTGGAG
>TU1735010
cagactcatggtgctccacagagattgactggatggacgcttgtcagactcatggtgctccacagagattgactggatggactcttgtcagactcatggtgctccacagagtgGCCGACGGAAACTAGATGGAcgttaatttaatttattgaacAGATTGTAAATGATGTAAACTATTGTCTTCACATAAGGACATGTTTAAACAAATTGTGGCAATATAGAAGTATTTTGTATTATATTTCCTACTTCTCATTCTAGACTCATTGCAGGAGATTTCCCCTGAAGTTGGAACTTTTTAAAAGGTGTTTTTAAattatctggggggggGGAATAAAGATGGAGAATTGCTATTTGTCATTTTATTTAAAGTGGCCTTCCTAAAAGGACATTTCACTCTTGAAATTTTTATGGACACAGTAACGCCTTGTTAGGATGAAGGAATTTCACTACCCATTTATGATTATGTGCAGATTTTTAATATGAAGTCAGTTTAAAAAGCCCAGATGAATTGAGGTGTCACCACTCAATGTTTTACTTTTCCTGTTAAATTGATATCCCAAGAACACAAAGGGTGAAAGTGAGGAAAATAGTGTTAACTGAGTTGGTCTGATTGGAATCCAGAATTTCATCGTTCTCCCCCTTGCTTGACGAGCaatacagaccccccccccccaccacttgTGCTGTGATtacttacctggaccacctacTGAGACTTGAGTGCCTCTTTAAAAGGTGCAATTACCACTTTATAGACCACTGTTGTAGCCTCTTCTGCCTCCATGTGGTGGGTTCTAGTAATTACAGCAGCACATTGTCCTTTCACTATCTTGTTTTTTCCCTGCAAATGTGTTAACCATAATCTACCTGTAGCATCCCATTTATCGAATGGCCTGTGTCTTATATACCTAATAAATCAACTGAATGTGTTAAACTATGTAGCCTGTAACCCAGGTAGAGAATAATAAACGTGTGAATCTGGAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735011 False 1178 lncRNA 0.42 4 10134606 10137597
TU1735010 True 984 lncRNA 0.39 3 10136428 10137597

Neighbor

gene id symbol gene type direction distance location
LOC110495585 LOC106574888 coding upstream 478 10131530 ~ 10134128 (+)
LOC118941061 NA coding upstream 12796 10118660 ~ 10121810 (+)
LOC110495584 LOC106574807 coding upstream 241371 9887375 ~ 9893235 (+)
LOC110495581 LOC106575873 coding upstream 258712 9874710 ~ 9875894 (+)
LOC110495578 LOC106575871 coding upstream 270244 9863382 ~ 9864362 (+)
LOC118941088 LOC106575836 coding downstream 9352 10146949 ~ 10149129 (+)
LOC118941089 LOC106574813 coding downstream 224973 10362570 ~ 10368578 (+)
LOC110510737 LOC106575810 coding downstream 252031 10389628 ~ 10856330 (+)
LOC118941090 LOC106575811 coding downstream 718772 10856369 ~ 10862119 (+)
LOC110527277 LOC106575822 coding downstream 806806 10944403 ~ 10956829 (+)
G1515834 NA non-coding upstream 6094 10128259 ~ 10128512 (+)
G1515829 NA non-coding upstream 20730 10113609 ~ 10113876 (+)
G1515820 NA non-coding upstream 33882 10100350 ~ 10100724 (+)
G1515819 NA non-coding upstream 39868 10094404 ~ 10094738 (+)
G1515794 NA non-coding upstream 87372 10039133 ~ 10047234 (+)
G1515841 NA non-coding downstream 1378 10138975 ~ 10139576 (+)
G1515846 NA non-coding downstream 18869 10156466 ~ 10157258 (+)
G1515854 NA non-coding downstream 30494 10168091 ~ 10168751 (+)
G1515855 NA non-coding downstream 39354 10176951 ~ 10177404 (+)
G1515866 LOC107575789 non-coding downstream 72702 10210299 ~ 10210703 (+)
G1515776 NA other upstream 159300 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1131480 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 1454396 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 1458095 8623967 ~ 8676626 (+)
G1514274 NA other upstream 1557781 8576493 ~ 8576825 (+)
G1515853 NA other downstream 32505 10170102 ~ 10171956 (+)
G1516136 NA other downstream 181713 10310107 ~ 10327138 (+)
G1516637 NA other downstream 879168 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 948488 10978682 ~ 11092554 (+)
G1517015 NA other downstream 1495470 11633067 ~ 11634979 (+)

Expression


Co-expression Network