G1516079


Basic Information

Item Value
gene id G1516079
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10238521 ~ 10239459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735318
agataatactgcactgttggagcgaggaacacaagcatttagctgcacccgcaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaatatgtgtatgtgaccaataacatctgctaaatatgtgtatgtgaccaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaatatgtgtatgtgaccaataacatctgctaaatatgtgtatgtgaccaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatctgctaaccatgtgtatgtgaccaataacatctgctaaacatgtgtatgtgaccaataacatttgatttgatttggaatttgaTTTGGTTGTCAAAGCAAAATA

Function

NR:

description
PREDICTED: filaggrin-2-like isoform X42

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735318 True 939 lncRNA 0.36 1 10238521 10239459

Neighbor

gene id symbol gene type direction distance location
LOC118941088 LOC106575836 coding upstream 89392 10146949 ~ 10149129 (+)
LOC110495585 LOC106574888 coding upstream 104393 10131530 ~ 10134128 (+)
LOC118941061 NA coding upstream 116711 10118660 ~ 10121810 (+)
LOC110495584 LOC106574807 coding upstream 345286 9887375 ~ 9893235 (+)
LOC110495581 LOC106575873 coding upstream 362627 9874710 ~ 9875894 (+)
LOC118941089 LOC106574813 coding downstream 123111 10362570 ~ 10368578 (+)
LOC110510737 LOC106575810 coding downstream 150169 10389628 ~ 10856330 (+)
LOC118941090 LOC106575811 coding downstream 616910 10856369 ~ 10862119 (+)
LOC110527277 LOC106575822 coding downstream 704944 10944403 ~ 10956829 (+)
LOC118936256 LOC100194643 coding downstream 721285 10960744 ~ 10967479 (+)
G1516074 NA non-coding upstream 5734 10232577 ~ 10232787 (+)
G1515874 NA non-coding upstream 8698 10229440 ~ 10229823 (+)
G1515871 NA non-coding upstream 14727 10223583 ~ 10223794 (+)
G1515866 LOC107575789 non-coding upstream 27818 10210299 ~ 10210703 (+)
G1515855 NA non-coding upstream 61117 10176951 ~ 10177404 (+)
G1516094 NA non-coding downstream 13097 10252556 ~ 10252892 (+)
G1516108 NA non-coding downstream 23364 10262823 ~ 10263074 (+)
G1516126 NA non-coding downstream 48899 10288358 ~ 10288578 (+)
G1516128 NA non-coding downstream 57348 10296807 ~ 10298178 (+)
G1516129 NA non-coding downstream 59086 10298545 ~ 10298825 (+)
G1515853 NA other upstream 66565 10170102 ~ 10171956 (+)
G1515776 NA other upstream 263215 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1235395 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 1558311 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 1562010 8623967 ~ 8676626 (+)
G1516136 NA other downstream 79851 10310107 ~ 10327138 (+)
G1516637 NA other downstream 777306 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 846626 10978682 ~ 11092554 (+)
G1517015 NA other downstream 1393608 11633067 ~ 11634979 (+)
G1517019 NA other downstream 1403330 11642789 ~ 11643758 (+)

Expression


Co-expression Network