G1516179 (LOC106569275)


Basic Information

Item Value
gene id G1516179
gene name LOC106569275
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10414757 ~ 10415193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735444
ACCACGTTTTCCACTACCTTTGGCTGCAGTGATAACAGTAACACATTTCCTCAAGCGACAACACTTCTTCTCACTCAGCTGGTCTAACCCccctgtcttctgtaacatcacagctggtctaaccccaccatcttctgtaacatcacagctgacctcacaaacttatcaacatcaaaaaaatctgccaatttgacagatttcccaaaAGTCTGATCCAGGAACGCATTTACCTCCTCTAGATCGTAAATTGAGTCGTCACCAGCTGCTATCTTATCAATAGAGATATCCATATCCTTCTCCTGATCCTCCTCAACTGAGGCCACAGACCCCTGACTCCCTTCTACCACATCCCTCTCAACACTCCACACTTACGCCCCAtcactcgtaccaggcatctcctccactacctggaagattagctccacatgaaccccccc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106569275

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735444 True 437 lncRNA 0.47 1 10414757 10415193

Neighbor

gene id symbol gene type direction distance location
LOC118941089 LOC106574813 coding upstream 46179 10362570 ~ 10368578 (+)
LOC118941088 LOC106575836 coding upstream 265628 10146949 ~ 10149129 (+)
LOC110495585 LOC106574888 coding upstream 280629 10131530 ~ 10134128 (+)
LOC118941061 NA coding upstream 292947 10118660 ~ 10121810 (+)
LOC110495584 LOC106574807 coding upstream 521522 9887375 ~ 9893235 (+)
LOC118941090 LOC106575811 coding downstream 441176 10856369 ~ 10862119 (+)
LOC110527277 LOC106575822 coding downstream 529210 10944403 ~ 10956829 (+)
LOC118936256 LOC100194643 coding downstream 545551 10960744 ~ 10967479 (+)
LOC118941091 NA coding downstream 546592 10961785 ~ 10965666 (+)
LOC110527282 acadl coding downstream 558635 10973828 ~ 10979399 (+)
G1516178 NA non-coding upstream 40 10414441 ~ 10414717 (+)
G1516174 NA non-coding upstream 4005 10410534 ~ 10410752 (+)
G1516172 NA non-coding upstream 12007 10402459 ~ 10402750 (+)
G1516169 NA non-coding upstream 17211 10397282 ~ 10397546 (+)
G1516154 NA non-coding upstream 62095 10352358 ~ 10352662 (+)
G1516181 NA non-coding downstream 4264 10419457 ~ 10419810 (+)
G1516187 NA non-coding downstream 9617 10424810 ~ 10425138 (+)
G1516197 NA non-coding downstream 25914 10441107 ~ 10441307 (+)
G1516198 NA non-coding downstream 26253 10441446 ~ 10441669 (+)
G1516202 NA non-coding downstream 29874 10445067 ~ 10445268 (+)
G1516136 NA other upstream 87619 10310107 ~ 10327138 (+)
G1515853 NA other upstream 242801 10170102 ~ 10171956 (+)
G1515776 NA other upstream 439451 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 1411631 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 1734547 8677497 ~ 8682383 (+)
G1516637 NA other downstream 601572 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 670892 10978682 ~ 11092554 (+)
G1517015 NA other downstream 1217874 11633067 ~ 11634979 (+)
G1517019 NA other downstream 1227596 11642789 ~ 11643758 (+)
G1517150 NA other downstream 1524869 11940062 ~ 11941897 (+)

Expression


Co-expression Network