G1516660


Basic Information

Item Value
gene id G1516660
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11079046 ~ 11079822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736016
ATTTAGAATCTCTATTTAGGCAGCATATTTAGAATCTCTATTTAGGCAGCATATTTAGAATCTCTGGTGCTTTGTCATTGACTGACCTTGTAAAGATGGTCATGTTTTAGCAGCTTTAGAATCTGCAAAACGAATTAGATGAAaagcccaggtgtgtgtgtgtgtatgtattgtgtgtatgtatttatgtgtgtgtttgactgtgtgtatTCCCACTTGTGTGAGTGTATTTATATGCGTGTTTGACTGTGTGTATTCCCACTTGTGTGAGTGTATTTATATGCGTGTTTGACTGTGTGTATTCCCACTTGTGTTTGTCTGCGTTTAATTGGCACAGGTGTGTGTCCTCAGGTGACAGGAGAATCCAGGTCAGAGTCTGGTTGATGAAATACTAGGTTTGTAGGCCAGGGTTCTCCTTTCCAGAGACGTACCAGCTTGTGTTCATTCATTGGCTAACGTCTCATTCCAACCACGTCTCTTGTGATCGCTACACGGTATAGGTCTTGCCAGTCCTGTATTTCAGATAAGTGTTTGCAccttaaataaaacaaataaaacattggAAATGATGACCTTATGCGCTGCATGACCCTTAAGAACAGCCTCAACTCaatattgggaaggtgttctttatgttttgtactctgtgtatatgtcgcggcatggattctacaagtatACAAGTGTATGTACTAATGTCAATGCGAGTACCgggtggcagatagcctagcggttaagagtaccgggcggcagatagcctagcggttaagagtaccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736016 True 777 lncRNA 0.42 1 11079046 11079822

Neighbor

gene id symbol gene type direction distance location
LOC110527282 acadl coding upstream 99647 10973828 ~ 10979399 (+)
LOC118936256 LOC100194643 coding upstream 111567 10960744 ~ 10967479 (+)
LOC118941091 NA coding upstream 113380 10961785 ~ 10965666 (+)
LOC110527277 LOC106575822 coding upstream 122217 10944403 ~ 10956829 (+)
LOC118941090 LOC106575811 coding upstream 216927 10856369 ~ 10862119 (+)
LOC110514120 NA coding downstream 13764 11093586 ~ 11189284 (+)
LOC110527285 LOC106574778 coding downstream 133691 11213513 ~ 11214997 (+)
LOC110495609 LOC106590510 coding downstream 282789 11362611 ~ 11420903 (+)
LOC110528750 LOC106575767 coding downstream 373192 11453014 ~ 11456879 (+)
LOC110495615 LOC106574963 coding downstream 669907 11749729 ~ 11759288 (+)
G1516640 NA non-coding upstream 58760 11019869 ~ 11020286 (+)
G1516639 NA non-coding upstream 60555 11017565 ~ 11018491 (+)
G1516638 NA non-coding upstream 61643 11017189 ~ 11017403 (+)
G1516634 NA non-coding upstream 66655 11012158 ~ 11012391 (+)
G1516622 NA non-coding upstream 87080 10991065 ~ 10991966 (+)
G1516683 NA non-coding downstream 112500 11192322 ~ 11194769 (+)
G1516694 NA non-coding downstream 136436 11216258 ~ 11216756 (+)
G1516693 NA non-coding downstream 141843 11221665 ~ 11222237 (+)
G1516699 NA non-coding downstream 149898 11229720 ~ 11231308 (+)
G1516637 NA other upstream 61957 11016765 ~ 11017089 (+)
G1516136 NA other upstream 751908 10310107 ~ 10327138 (+)
G1515853 NA other upstream 907090 10170102 ~ 10171956 (+)
G1515776 NA other upstream 1103740 9974528 ~ 9975306 (+)
G1515005 cbs other upstream 2075920 9000398 ~ 9003126 (+)
LOC118941092 LOC106575823 other downstream 6263 10978682 ~ 11092554 (+)
G1517015 NA other downstream 553245 11633067 ~ 11634979 (+)
G1517019 NA other downstream 562967 11642789 ~ 11643758 (+)
G1517150 NA other downstream 860240 11940062 ~ 11941897 (+)
G1517414 LOC106575752 other downstream 1753829 12833651 ~ 12872163 (+)

Expression


Co-expression Network