G1516683


Basic Information

Item Value
gene id G1516683
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11192322 ~ 11194769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736041
GCAGTATGACTGTTATCTCAGTTCAACTTGGATAAGAATGTACACGATCAAATCTGACCTTAAATCACATTATTACTGCGAGTCACAATATAGAAATAGGATGTTTAGTAAGTTAATATTTTGGCTTCAACCAACAAACACCAGGTTAGTGTTCACTGTTGTTAATATATTTAAATAGATGGACACATCAAAGTATATAATATTCTTATATACATGTACCTTGACATTTTCTGAAATAATATCTTATTCAATATTCACATACCAGACATTATGATATCATGTGCTTTAAGCAGAGAAAAGGCCAGAAGTCCTTTGACAGTTGATTCCGTTTCTATTCCAGTTCAGTTCATAGAGGTAAACCAAGGTCACAGCAGCATACTGATAACTGACGCTGCTTACTTAGCGAGTACCGCTTCCTCCTGATCGGGCTCACACGGACGCTCGAACCCAGGACATCTGCTTGGCTAGCACACGTGACCGCCCTCCCGAAGCGTCTTACCAGTCGGCGCCATTGAAGCGTTAACAATTCGGCTGCACAAGTGgtgacacttcaggctgaggagtaagtttcCCACATCCCCCATGTGCTACACTCTCACCATACACCCTTTATCCTGCTGATACTACACGTTCTCTCACCATACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTACTGATACTACACACACGTTCTCTTAGTAAACAACATTTATCCTGCTGATACTACACGTTCTCTTAATAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATActacacacacacgttctcttaGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCGTGCTGATActacacacacacgttctcttaGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAATAAACACCATTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAATAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAATAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAATAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAATAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAATAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATActacacacacacgttctcttaGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAATAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATActacacacacacgttctcttaGTAAACAACCTTTATCCTGCTGATACTACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACACCCTTTATCCTGCTGATACTACACACACGTTCTCTTAATAAACAACCTTTATCCTGCTGATACTACACACACGTTCTCTTAGTAAACAACCTTTATCCTGCTGATACTACACGTTCTCTTAATAAACCAACACAAGGGAATATGTTTGTGCCTTATATCTCATTATAAAATATAGTCCCGGACTGCATCTCATGTCTTGAAAGGCTTCCTTACCTCCCCACTTTATCTGGAGCGCAGCCAGTATTGGACTGACTACTGAGACTCAGCCAGTATTGGGTGAGTACTGAGACTcagccagtattggactgagtactgagacgcagccagtattggactgagtactgagactcagccagtattggactgagtactgagatgcagccagtattggactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736041 True 2448 lncRNA 0.40 1 11192322 11194769

Neighbor

gene id symbol gene type direction distance location
LOC110514120 NA coding upstream 3038 11093586 ~ 11189284 (+)
LOC118941092 LOC106575823 coding upstream 101693 10978682 ~ 11092554 (+)
LOC110527282 acadl coding upstream 212923 10973828 ~ 10979399 (+)
LOC118936256 LOC100194643 coding upstream 224843 10960744 ~ 10967479 (+)
LOC118941091 NA coding upstream 226656 10961785 ~ 10965666 (+)
LOC110527285 LOC106574778 coding downstream 18744 11213513 ~ 11214997 (+)
LOC110495609 LOC106590510 coding downstream 167842 11362611 ~ 11420903 (+)
LOC110528750 LOC106575767 coding downstream 258245 11453014 ~ 11456879 (+)
LOC110495615 LOC106574963 coding downstream 554960 11749729 ~ 11759288 (+)
LOC110495622 LOC106575786 coding downstream 571594 11766363 ~ 11772739 (+)
G1516660 NA non-coding upstream 112500 11079046 ~ 11079822 (+)
G1516640 NA non-coding upstream 172036 11019869 ~ 11020286 (+)
G1516639 NA non-coding upstream 173831 11017565 ~ 11018491 (+)
G1516638 NA non-coding upstream 174919 11017189 ~ 11017403 (+)
G1516634 NA non-coding upstream 179931 11012158 ~ 11012391 (+)
G1516694 NA non-coding downstream 21489 11216258 ~ 11216756 (+)
G1516693 NA non-coding downstream 26896 11221665 ~ 11222237 (+)
G1516699 NA non-coding downstream 34951 11229720 ~ 11231308 (+)
G1516702 NA non-coding downstream 44492 11239261 ~ 11239673 (+)
G1516637 NA other upstream 175233 11016765 ~ 11017089 (+)
G1516136 NA other upstream 865184 10310107 ~ 10327138 (+)
G1515853 NA other upstream 1020366 10170102 ~ 10171956 (+)
G1515776 NA other upstream 1217016 9974528 ~ 9975306 (+)
G1517015 NA other downstream 438298 11633067 ~ 11634979 (+)
G1517019 NA other downstream 448020 11642789 ~ 11643758 (+)
G1517150 NA other downstream 745293 11940062 ~ 11941897 (+)
G1517414 LOC106575752 other downstream 1638882 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1739885 12934654 ~ 12936278 (+)

Expression


Co-expression Network