XLOC_003448 (syt6b)


Basic Information

Item Value
gene id XLOC_003448
gene name syt6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24620742 ~ 24664031 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006747
gcgtctgtgcgtgtgtgtgcgcgcgcgcgtgccCCTAGACAATTACAATACAGCATCTCTGAGCAATGGCTGGCTTCCTTGCGGTGCCATAGAAACGCGGTCCCGTGCGCGCTGCTGTGGAGAGCTCATTCTGAGGCGAGCTTGCGGAAAGACAAGAGCTGTTTTGAGGCAGGGGGTCTCAAAAACTGCAAGAAAGCGACTTTAAGTGGGATTACCAGAAGTAAGGCAAGGAAAAACGCTTTGTGACATTTCCTTCAGTCTCCTGCTGCTTGTATTTGTGGTGTGCGGTTTGGCCCTGCTGGGTGTCATCAGCGTCGCCACCTGGAAGCTGTGCTGGGTGTCCTGGCGCAGCAAAGTGCTTTCCTCTAGCGCCACCGCCCTTGCTCCCACCCAGCCAGAGAGAGAACAACCCAGAGAAGAAGGTCACGGTGACTACTACCCGGCCCTCAGAGACATTATGGCAGCAGACAAGCTGAAGGATCCTGGGAACTTTCTGGAGGCGGCAGTGAAGATTAGTCATACGTCGCCAGATATCCCCGCAGACGTGCAGCTGTCCATGAAGGATCATCTTCTGAGACGGACGCGTATCTCACGGCAAACAACCGAGCCGGCCTCCTCCAACAGGCATAGTTCCTTTAAGAAGCACCTTCCCAGGCAGATGCACCATGTCACCAGTCTGGACCGCGGAAGTGAATTTTTAGACGTGGAGGACCATCCCAGTTGCACCGCTGCCTCTCTTGGACGCATCCAACCGGAACTTTATAAACAGAGCACAATGGAAGCAGAGGATTCTTCTAAAAATGACACTGACAAATCATGCGGCAAGATCAACTTCTCCCTAAAGTACGATTATGAGGGAGAGCTCCTCCTCGTCACTATCCTCAAGGCATTCGATCTTCCTGCAAAGGATTTGTGCGGGAGTTCCGATCCATATGTCAAGATCTACCTGCTGCCTGACCGCAAGCGTAAATTTCAAACTCGTGTTCACCGCAAGACGCTCAACCCCACGTTTGATGAGACCTTTCAATTTCCAGTACCATACGAGGAGCTGGGGTCCAGGAAACTCCACTTGAGCGTTTTTGACTTTGACCGCTTCTCACGGCACGACATGATTGGCGAGGTGATCCTGGAAAACCTCTTTGAAGTTTCAGACCTCTCGCGAGAGACGTCCATCTGGAAGGACATCCAGTACGCCACTAGCGAGAGTGTGGATCTCGGAGAGATAATGTTCTCTCTGTGCTACTTGCCGACTGCAGGGAGACTCACACTTACAGTCATCAAATGTAGGAACCTCAAAGCTATGGATATTACTGGTTATTCAGGTATGCAGCTGTCCTCCTGTGCATCTTCATTTTCTCACATCTGTCGGCTTGCTTCCCTCTTCCTGTTTTACACTTGGACAGCCACATTTATCATTGTCAGAAAGTCAGACATATTAGGATCATGGGAAGACAAGGGGAAGATGTGTTGA
>TCONS_00006748
CCTTGCGGTGCCATAGAAACGCGGTCCCGTGCGCGCTGCTGTGGAGAGCTCATTCTGAGGCGAGCTTGCGGAAAGACAAGAGCTGTTTTGAGGCAGGGGGTCTCAAAAACTGCAAGAAAGCGACTTTAAGTGGGATTACCAGAAGTAAGGCAAGGAAAAACGCTTTGTGACATTTCCTTCAGTCTCCTGCTGCTTGTATTTGTGGTGTGCGGTTTGGCCCTGCTGGGTGTCATCAGCGTCGCCACCTGGAAGCTGTGCTGGGTGTCCTGGCGCAGCAAAGTGCTTTCCTCTAGCGCCACCGCCCTTGCTCCCACCCAGCCAGAGAGAGAACAACCCAGAGAAGAAGGTCACGGTGACTACTACCCGGCCCTCAGAGACATTATGGCAGCAGACAAGCTGAAGGATCCTGGGAACTTTCTGGAGGCGGCAGTGAAGATTAGTCATACGTCGCCAGATATCCCCGCAGACGTGCAGCTGTCCATGAAGGATCATCTTCTGAGACGGACGCGTATCTCACGGCAAACAACCGAGCCGGCCTCCTCCAACAGGCATAGTTCCTTTAAGAAGCACCTTCCCAGGCAGATGCACCATGTCACCAGTCTGGACCGCGGAAGTGAATTTTTAGACGTGGAGGACCATCCCAGTTGCACCGCTGCCTCTCTTGGACGCATCCAACCGGAACTTTATAAACAGAGCACAATGGAAGCAGAGGATTCTTCTAAAAATGACACTGACAAATCATGCGGCAAGATCAACTTCTCCCTAAAGTACGATTATGAGGGAGAGCTCCTCCTCGTCACTATCCTCAAGGCATTCGATCTTCCTGCAAAGGATTTGTGCGGGAGTTCCGATCCATATGTCAAGATCTACCTGCTGCCTGACCGCAAGCGTAAATTTCAAACTCGTGTTCACCGCAAGACGCTCAACCCCACGTTTGATGAGACCTTTCAATTTCCAGTACCATACGAGGAGCTGGGGTCCAGGAAACTCCACTTGAGCGTTTTTGACTTTGACCGCTTCTCACGGCACGACATGATTGGCGAGGTGATCCTGGAAAACCTCTTTGAAGTTTCAGACCTCTCGCGAGAGACGTCCATCTGGAAGGACATCCAGTACGCCACTAGCGAGAGTGTGGATCTCGGAGAGATAATGTTCTCTCTGTGCTACTTGCCGACTGCAGGGAGACTCACACTTACAGTCATCAAATGTAGGAACCTCAAAGCTATGGATATTACTGGTTATTCAGATCCGTACGTGAAGGTTTCGCTGATTTGTGATGGGAGACGCTTGAAAAAGAAGAAAACGTCCATAAAAAAGAACACGCTGAATCCAACATACAATGAGGCGATCATCTTTGACATTCCCCCGGAGAATATGGATCAAGTCAGCTTACACATATCGGTTATGGACTACGATCTAGTGGGACATAATGAGATCATTGGAGTCTGTCGTGTAGGGATCCATGCCGAGGGGCTTGGAAGAGACCACTGGAATGAGATGCTGGCTTACCCTCGAAAACCCATCGCTCACTGGCACCCACTTGTAGAGCCTAAGAAGTCTGAGAAGGAGTGGAAGGCTCGCACCGCAAGCTTTGACAGTCAAGGCTCTTGTCCATCTCCCAGACTCCCTTCAAGTCCATAAAAAGAGACAGCCTTTCTCTTCGACTTCAAGCCAAGTATCTCCAATGTATCTGGAGAGATTCGAGAAAAGTCCTTAAACGACATGTGACACAACTTATGTCTGTGTGGACATGCAGCGGAAAGCAGAGTGCATCCTAGCCAAGTTTTAGCTTATGTTGTGCTTGGATTGAAATGTCACTTTCCTACATTGGGTAGATCTACAAGCCACAACTCAATGAGGTTGAAGAATACACTTTAAGATGAATTAAAGCACCATAAAAGGGTGTATTTTCTGATGAATCTTGTAAAACTGATagatgtaaattatattttatctgACATTCTAATAGTATGAAGatatagtttattatatatttagccATTTCTTCCTTCCTGTTCATTTGTCTTGTGTTTAAAGATTTGTATGACTGGAAAGATATATGAAATCCTCTGTGATATATTAGCCAAattgtatgttgtttacatgctGATCAGAGTAATTCCATTGATCTTCCTTTCATTTGTGAAGTAGTGAATCTGTTCTGCCACCAAAAACACCAATGCCAAGAATCGTTTGTATTCTGTCTACAAATATCTCATCATCCGTGTAAATTGTAGaggttttgtttgtatttaatcattaaagttgctgttttgagtGTTCTAAATATTTTTCCATTGTTTTCCATTATTAAGTTCACCTCACAGATGTATCCTCCATTATCCATAATGTGTGGTTAAAATCATCATAATTTCTCAACGCAGTAATTGTAGCTTccaaagtataaaaaaaacataacgaATAATCAAGGTTGCAAATAATCCTTGGCTTTCTAAAATGACTTGAAATTATGTCTGTGTAAATTAGAAGCACTGTTTTACAAAGACTGGTTTTGTATTTTACATCAAATGTGAAAAATGTTCATTGTTCTGTATTTTTCCTGTTACCTTTGATGTGTTTTCTCTTTAGATAACATGATGTATTTTGTTGGCTGGCCTGGCTGGTACTCATTGTAATAGTCACCGGCGTTTCTGTATATGAAATGCCTGATTCAGAGCCACTTGCACCTTTTATATtgagaatttgtatttgtattgtacATTTGCTGTTTCAGAACATCCCCTTGTACTTCAAAGGTGTGATTAAAGTTTTTGCTTCTATTGGTTGATTTGTTCTTCTTTCATTACTTGTTTGGCTAAATGTTAGAAATAGCTGCATGATTAGGGCCAGTTAATATGtgtttctgcactgtaaaaaaaaatgtaag
>TCONS_00006749
atgcctCTGTGCTGGGTGTCCTGGCGCAGCAAAGTGCTTTCCTCTAGCGCCACCGCCCTTGCTCCCACCCAAGACATTATGGCAGCAGACAAGCTGAAGGATCCTGGGAACTTTCTGGAGGCGGCAGTGAAGATTAGTCATACGTCGCCAGATATCCCCGCAGACGTGCAGCTGTCCATGAAGGATCATCTTCTGAGACGGACGCGTATCTCACGGCAAACAACCGAGCCGGCCTCCTCCAACAGGCATAGTTCCTTTAAGAAGCACCTTCCCAGGCAGATGCACCATGTCACCAGTCTGGACCGCGGAAACGTGGAGGACCATCCCAGTTGCACCGCTGCCTCTCTTGGACGCATCCAACCGGAACTTTATAAACAGAGCACAATGGAAGCAGAGGATTCTTCTAAAAATGACACTGACAAATCATGCGGCAAGATCAACTTCTCCCTAAAGTACGATTATGAGGGAGAGCTCCTCCTCGTCACTATCCTCAAGGCATTCGATCTTCCTGCAAAGGATTTGTGCGGGAGTTCCGATCCATATGTCAAGATCTACCTGCTGCCTGACCGCAAGCGTAAATTTCAAACTCGTGTTCACCGCAAGACGCTCAACCCCACGTTTGATGAGACCTTTCAATTTCCAGTACCATACGAGGAGCTGGGGTCCAGGAAACTCCACTTGAGCGTTTTTGACTTTGACCGCTTCTCACGGCACGACATGATTGGCGAGGTGATCCTGGAAAACCTCTTTGAAGTTTCAGACCTCTCGCGAGAGACGTCCATCTGGAAGGACATCCAGTACGCCACTAGCGAGAGTGTGGATCTCGGAGAGATAATGTTCTCTCTGTGCTACTTGCCGACTGCAGGGAGACTCACACTTACAGTCATCAAATGTAGGAACCTCAAAGCTATGGATATTACTGGTTATTCAGATCCGTACGTGAAGGTTTCGCTGATTTGTGATGGGAGACGCTTGAAAAAGAAGAAAACGTCCATAAAAAAGAACACGCTGAATCCAACATACAATGAGGCGATCATCTTTGACATTCCCCCGGAGAATATGGATCAAGTCAGCTTACACATATCGGTTATGGACTACGATCTAGTGGGACATAATGAGATCATTGGAGTCTGTCGTGTAGGGATCCATGCCGAGGGGCTTGGAAGAGACCACTGGAATGAGATGCTGGCTTACCCTCGAAAACCCATCGCTCACTGGCACCCACTTGTAGAGCCTAAGAAGTCTGAGAAGGAGTGGAAGGCTCGCACCGCAAGCTTTGACAGTCAAGGCTCTTGTCCATCTCCCAGACTCCCTTCAAGTCCATAA
>TCONS_00006750
atgcctCTGTGCTGGGTGTCCTGGCGCAGCAAAGTGCTTTCCTCTAGCGCCACCGCCCTTGCTCCCACCCAAGACATTATGGCAGCAGACAAGCTGAAGGATCCTGGGAACTTTCTGGAGGCGGCAGTGAAGATTAGTCATACGTCGCCAGATATCCCCGCAGACGTGCAGCTGTCCATGAAGGATCATCTTCTGAGACGGACGCGTATCTCACGGCAAACAACCGAGCCGGCCTCCTCCAACAGGCATAGTTCCTTTAAGAAGCACCTTCCCAGGCAGATGCACCATGTCACCAGTCTGGACCGCGGAAACGTGGAGGACCATCCCAGTTGCACCGCTGCCTCTCTTGGACGCATCCAACCGGAACTTTATAAACAGAGCACAATGGAAGCAGAGGATTCTTCTAAAAATGACACTGACAAATCATGCGGCAAGATCAACTTCTCCCTAAAGTACGATTATGAGGGAGAGCTCCTCCTCGTCACTATCCTCAAGGCATTCGATCTTCCTGCAAAGGATTTGTGCGGGAGTTCCGATCCATATGTCAAGATCTACCTGCTGCCTGACCGCAAGCGTAAATTTCAAACTCGTGTTCACCGCAAGACGCTCAACCCCACGTTTGATGAGACCTTTCAATTTCCAGTACCATACGAGGAGCTGGGGTCCAGGAAACTCCACTTGAGCGTTTTTGACTTTGACCGCTTCTCACGGCACGACATGATTGGCGAGGTGATCCTGGAAAACCTCTTTGAAGTTTCAGACCTCTCGCGAGAGACGTCCATCTGGAAGGACATCCAGTACGCCACTAGCGAGAGTGTGGATCTCGGAGAGATAATGTTCTCTCTGTGCTACTTGCCGACTGCAGGGAGACTCACACTTACAGTCATCAAATGTAGGAACCTCAAAGCTATGGATATTACTGGTTATTCAGGTATGCAGCTATATATGAAATCCTCTGTGATATATTAG

Function

symbol description
syt6b Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within acrosome reaction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT6 (synaptotagmin 6).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0007340 acrosome reaction biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090601-3 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within acrosome reaction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT6 (synaptotagmin 6).

Ensembl:

ensembl_id ENSDARG00000031463

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006747 False 1471 mRNA 0.51 4 24620742 24658494
TCONS_00006748 False 2887 mRNA 0.43 7 24620818 24664031
TCONS_00006749 False 1326 mRNA 0.50 9 24639743 24662785
TCONS_00006750 True 969 mRNA 0.51 7 24639743 24663227

Neighbor

gene id symbol gene type direction distance location
XLOC_003447 BX072564.1 coding upstream 39628 24580579 ~ 24581114 (+)
XLOC_003446 rbm39a coding upstream 264649 24339362 ~ 24356093 (+)
XLOC_003445 rem1 coding upstream 288690 24313931 ~ 24332052 (+)
XLOC_003442 NA coding upstream 310097 24120291 ~ 24310645 (+)
XLOC_003449 gpr25 coding downstream 39077 24703108 ~ 24704437 (+)
XLOC_003450 inavab coding downstream 52806 24716837 ~ 24756816 (+)
XLOC_003451 rnpep coding downstream 94936 24758967 ~ 24783118 (+)
XLOC_003452 cyb5r1 coding downstream 122347 24786378 ~ 24799675 (+)
XLOC_003453 adipor1a coding downstream 136125 24800156 ~ 24815193 (+)
XLOC_003369 CR854846.2 misc upstream 8497660 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 11908746 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 11926479 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 11935143 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 11940714 12679732 ~ 12680028 (+)
XLOC_003444 AL831791.1 non-coding upstream 441804 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 443091 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 469525 24116083 ~ 24151217 (+)
XLOC_003463 NA non-coding downstream 395431 25059462 ~ 25060098 (+)
XLOC_003466 NA non-coding downstream 517826 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 592781 25256812 ~ 25266235 (+)
XLOC_003487 NA non-coding downstream 1165339 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1413916 26077947 ~ 26078061 (+)

Expression


Co-expression Network