G1516911


Basic Information

Item Value
gene id G1516911
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11353449 ~ 11389130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736357
GtgcatttatttgttattttacacAAGAGCGTAAAAACATCCACTGACTGGCAAGAAACTGCGTTTGCAAATTCAAAAAGAGTTGCAAATGATTTGCAGGTTGTGACTGAAATGTACACACATTGGCTGTTTTTCTTTTGTGTGGTGAAATAAATGCAAACGAGTTGAACAAAAAGAACAAGATAACTGAAATAGAACTAATGGTACATTATTTTAAACAGTAGCAGAACTGACATTTTTAAACATTACACAGAAAGCACACCTTCATTGATTCCGTTTCACAAAACTTCACAAAATCACTGCACCTACAGATcaacaaatatataaatatgatATTTACAGAATAAACAATGATCTAATAATGTGGATTTGAAAGTCTACTCCTTCATTCTACATACTAAGCACCAATACTTTCTAAATGCGTCATCTAGAGGAGTGTTTGGGACTGGATGGATTCTCCTGGCTTCACATTGACACCTCACTAACCATCATACACACATCAACATGAATACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATACATACATCTACTTCTCACATTCTACAGATTGGCTTTCGTGTTTGTAATGTCTTTTTTATGGCCCCGGTGAAGACCAGAAGTTGCTTAAGAGTCAGCTGATGGGGATCAGAATAaagaatacaaaataaaatagagCTTTAGAGTTTTGACTCTGGTCTCGGCTGTCAGTCCGTTTGACATTCCTGATTTCCATGTAAACACAGTGGCTTGATTCAGTGGCAGGTCCTTCAGGGTAATGgagtctggttgactgactgCCTGCTCACATAAACACTGGCAGGGAGAGCACCTCGTCTCCCTCCGCTGTGGCTCTGACCAGGGcagggggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU1736359
GGTTGTGACTGAAATGTACACACATTGGCTGTTTTTCTTTTGTGTGGTGAAATAAATGCAAACGAGTTGAACAAAAAGAACAAGATAACTGAAATAGAACTAATGGTACATTATTTTAAACAGTAGCAGAACTGACATTTTTAAACATTACACAGAAAGCACACCTTCATTGATTCCGTTTCACAAAACTTCACAAAATCACTGCACCTACAGATcaacaaatatataaatatgatATTTACAGAATAAACAATGATCTAATAATGTGGATTTGAAAGTCTACTCCTTCATTCTACATACTAAGCACCAATACTTTCTAAATGCGTCATCTAGAGGAGTGTTTGGGACTGGATGGATTCTCCTGGCTTCACATTGACACCTCACTAACCATCATACACACATCAACATGAATACTTCTCACATTGACACCTCACTAACCATCATACACACATCAACATACATACATCTACTTCTCACATTCTACAGATTGGCTTTCGTGTTTGTAATGTCTTTTTTATGGCCCCGGTGAAGACCAGAAGTTGCTTAAGAGTCAGCTGATGGGGATCAGAATAaagaatacaaaataaaatagagCTTTAGAGTTTTGACTCTGGTCTCGGCTGTCAGTCCGTTTGACATTCCTGATTTCCATGTAAACACAGTGGCTTGATTCAGTGGCAGGTCCTTCAGGGTAATGgagtctggttgactgactgCCTGCTCACATAAACACTGGCAGGGAGAGCACCTCGTCTCCCTCCGCTGTGGCTCTGACCAGGGcagggggaagtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgtgagcTTGACGTGAGCTTGTCCAATAGTCAGCTTGGTCAAGTGAACTGATTAAATTGCCGTTGGCTTATCCTCAGACCTAGTGAGACTTTTTCTCTACCCAGCCTAAGTCTCTTAAATTCTCCTAATGGCAATATAGTGGACTTTAAATGCTGACCTTTCTACCACTTGCACCACTGCTTTCTCTTCAC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736357 False 935 lncRNA 0.40 2 11353449 11354445
TU1736359 True 1032 lncRNA 0.41 3 11353547 11389130

Neighbor

gene id symbol gene type direction distance location
LOC110527285 LOC106574778 coding upstream 138452 11213513 ~ 11214997 (+)
LOC110514120 NA coding upstream 164165 11093586 ~ 11189284 (+)
LOC118941092 LOC106575823 coding upstream 262820 10978682 ~ 11092554 (+)
LOC110527282 acadl coding upstream 374050 10973828 ~ 10979399 (+)
LOC118941091 NA coding upstream 387783 10961785 ~ 10965666 (+)
LOC110528750 LOC106575767 coding downstream 63884 11453014 ~ 11456879 (+)
LOC110495615 LOC106574963 coding downstream 360599 11749729 ~ 11759288 (+)
LOC110495622 LOC106575786 coding downstream 377233 11766363 ~ 11772739 (+)
LOC110495619 slc19a2 coding downstream 383984 11773114 ~ 11779870 (+)
LOC118941042 LOC105005823 coding downstream 402471 11791601 ~ 11802738 (+)
G1516899 NA non-coding upstream 12099 11340388 ~ 11341350 (+)
G1516891 NA non-coding upstream 13993 11336239 ~ 11339456 (+)
G1516875 NA non-coding upstream 32773 11320428 ~ 11320676 (+)
G1516862 NA non-coding upstream 44425 11308230 ~ 11309024 (+)
G1516702 NA non-coding upstream 113776 11239261 ~ 11239673 (+)
G1516960 NA non-coding downstream 123959 11513089 ~ 11513506 (+)
G1516961 NA non-coding downstream 124707 11513837 ~ 11515942 (+)
G1516975 NA non-coding downstream 159268 11548398 ~ 11548669 (+)
G1516998 NA non-coding downstream 205532 11594662 ~ 11595011 (+)
G1516999 NA non-coding downstream 208162 11597292 ~ 11597705 (+)
G1516637 NA other upstream 336360 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1026311 10310107 ~ 10327138 (+)
G1515853 NA other upstream 1181493 10170102 ~ 10171956 (+)
G1515776 NA other upstream 1378143 9974528 ~ 9975306 (+)
G1517015 NA other downstream 243937 11633067 ~ 11634979 (+)
G1517019 NA other downstream 253659 11642789 ~ 11643758 (+)
G1517150 NA other downstream 550932 11940062 ~ 11941897 (+)
G1517414 LOC106575752 other downstream 1444521 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1545524 12934654 ~ 12936278 (+)

Expression


Co-expression Network