G1517042


Basic Information

Item Value
gene id G1517042
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11705552 ~ 11764757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736517
agacgacaccattctgtatacatctggcccttctttggacactgtgtttacaaacctccaaacgagcttcaatgccatacaactctccttccgtggcctccaactgctcttaaatgctagtaaaactaaatgcatgctcttcaaccgatcgctgcccgcacctgcccgcccacccagcatcactactctggatggttcggacttagaatatgtggacaactacaaatacctagatgtctggctagactctaaactctccttccagacccatatcaaacatctccaatcgaaaatcaaatcaagagtcggctttctattccgcaacaaagcctccttcactcacgccgccaaacttaccctagtaaaactga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736517 True 371 lncRNA 0.47 2 11705552 11764757

Neighbor

gene id symbol gene type direction distance location
LOC110528750 LOC106575767 coding upstream 248673 11453014 ~ 11456879 (+)
LOC110495609 LOC106590510 coding upstream 284649 11362611 ~ 11420903 (+)
LOC110527285 LOC106574778 coding upstream 490555 11213513 ~ 11214997 (+)
LOC110514120 NA coding upstream 516268 11093586 ~ 11189284 (+)
LOC118941092 LOC106575823 coding upstream 614923 10978682 ~ 11092554 (+)
LOC110495622 LOC106575786 coding downstream 1606 11766363 ~ 11772739 (+)
LOC110495619 slc19a2 coding downstream 8357 11773114 ~ 11779870 (+)
LOC118941042 LOC105005823 coding downstream 26844 11791601 ~ 11802738 (+)
LOC110495630 LOC106575789 coding downstream 38420 11803177 ~ 11808380 (+)
trnas-cga-32 NA coding downstream 44152 11808909 ~ 11808990 (+)
G1517014 NA non-coding upstream 53273 11632537 ~ 11652279 (+)
G1517010 NA non-coding upstream 80274 11624596 ~ 11625278 (+)
G1517002 NA non-coding upstream 96709 11608248 ~ 11608843 (+)
G1516999 NA non-coding upstream 107847 11597292 ~ 11597705 (+)
G1516998 NA non-coding upstream 110541 11594662 ~ 11595011 (+)
G1517065 rgn non-coding downstream 52598 11817355 ~ 11820418 (+)
G1517095 NA non-coding downstream 72587 11837344 ~ 11837614 (+)
G1517060 NA non-coding downstream 73770 11838527 ~ 11841346 (+)
G1517101 NA non-coding downstream 96615 11861372 ~ 11862045 (+)
G1517150 NA non-coding downstream 175305 11940062 ~ 11941897 (+)
G1517019 NA other upstream 61794 11642789 ~ 11643758 (+)
G1517015 NA other upstream 70573 11633067 ~ 11634979 (+)
G1516637 NA other upstream 688463 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1378414 10310107 ~ 10327138 (+)
G1517414 LOC106575752 other downstream 1068894 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1169897 12934654 ~ 12936278 (+)
G1517457 NA other downstream 1172766 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1422344 13187101 ~ 13188080 (+)

Expression


Co-expression Network