G1517065 (rgn)


Basic Information

Item Value
gene id G1517065
gene name rgn
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11817355 ~ 11820418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736545
TTTTTTATTGGACAGAAGATATACAATAGCCTACTAATACATTAAGTACAGTAACTATAACTGAGGCATGTTGAGTTTTGCTTAAAATCATAAAGTCACATTATTTTATTAGTGAGATTAGTGGTCAGTTGTGCAGCCGAGTTACTGGTTGATCATCATGGAATGATTGACAAGGCCCGGTTTTCAGTGTTTCCATTGTGTCACTCATCCAGTGAATGAATTTGCAGGAATGCCCTTTGCACCCAGGCCTGTGATCCTAAAGACACATCCTGCCTGCGGTTGCTTGGCCATGTCTGCCTCATCCATTCCCTTACAGGCTGAGGTCACGTACAGGTCTGAATAGTCTCTACCCCCGaaacaacatgatgttgtctTATCCACCGGTAGCTTCACTGTCTGCAAACGCACCCctgtctgtggGTCAATCTGTATCACTCTGCCTCCACTGTAGCATGCGACCCAGAGTCTACCGTCTGCGTCAATACACATGCCATCAGGAATCCCCTCTCCCTCGTCCATCTTATACACCATCCGCCggttactgatACTCCCGGTGTTGATGTCATAGTTGAAAGCTTCCACAGTGTAAGTGAGGCTGTCTATGTAGTAGAAGGTTTTGTGGTCCAGAGACCAGTCCAGACCGTTTGAGATGTCCACCTGATTGAAATGTTTGACTACAATGTGGTCCTTGTTCAGGGAGAACAGAGAACCCTGCTTCAGCTCTAGAACTGTAGGACGTTCCTCTATCGCCATGGTacCTGCAAAGAGGCGTCCAGCAGGGTCCACCTTGCCGTCATTAAAGCGGTTGTTGGGTTTGTCTTCATCGATGACAGCGATGGTGGAGATGGACTTGGACTCCCAGTCCAGCGCTCCAAAACTCCGTCCCTCTCCGATCACATAGCCTCCAGACCGCCGGGGGACCGCACAGCCCACAAACTTCTCTGGGGGGAGGAGTGGGGattg

Function

symbol description
rgn Predicted to enable calcium ion binding activity; gluconolactonase activity; and zinc ion binding activity. Predicted to be involved in several processes, including L-ascorbic acid biosynthetic process; positive regulation of ATPase activity; and regulation of calcium-mediated signaling. Predicted to be located in cytoplasm and nucleus. Is expressed in intestine; kidney; and liver. Orthologous to human RGN (regucalcin).

NR:

description
regucalcin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736545 True 963 lncRNA 0.49 6 11817355 11820418

Neighbor

gene id symbol gene type direction distance location
LOC118941095 LOC106575791 coding upstream 3123 11809043 ~ 11814232 (+)
trnas-cga-32 NA coding upstream 8365 11808909 ~ 11808990 (+)
LOC110495630 LOC106575789 coding upstream 8975 11803177 ~ 11808380 (+)
LOC118941042 LOC105005823 coding upstream 14617 11791601 ~ 11802738 (+)
LOC110495619 slc19a2 coding upstream 37485 11773114 ~ 11779870 (+)
LOC110497058 LOC106575722 coding downstream 65455 11885873 ~ 11926209 (+)
LOC110527250 LOC106575686 coding downstream 187536 12007954 ~ 12021342 (+)
zswim2 LOC106574814 coding downstream 218324 12038742 ~ 12045602 (+)
dytn LOC106574817 coding downstream 228561 12048979 ~ 12060014 (+)
LOC110538823 LOC105019738 coding downstream 248631 12069049 ~ 12080939 (+)
G1517042 NA non-coding upstream 52598 11705552 ~ 11764757 (+)
G1517073 NA non-coding upstream 59389 11757256 ~ 11757966 (+)
G1517014 NA non-coding upstream 165076 11632537 ~ 11652279 (+)
G1517010 NA non-coding upstream 192077 11624596 ~ 11625278 (+)
G1517002 NA non-coding upstream 208512 11608248 ~ 11608843 (+)
G1517095 NA non-coding downstream 16926 11837344 ~ 11837614 (+)
G1517060 NA non-coding downstream 18109 11838527 ~ 11841346 (+)
G1517101 NA non-coding downstream 40954 11861372 ~ 11862045 (+)
G1517150 NA non-coding downstream 119644 11940062 ~ 11941897 (+)
G1517174 NA non-coding downstream 173284 11993702 ~ 11994943 (+)
G1517019 NA other upstream 173597 11642789 ~ 11643758 (+)
G1517015 NA other upstream 182376 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 724801 10978682 ~ 11092554 (+)
G1516637 NA other upstream 800266 11016765 ~ 11017089 (+)
G1516136 NA other upstream 1490217 10310107 ~ 10327138 (+)
G1517414 LOC106575752 other downstream 1013233 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 1114236 12934654 ~ 12936278 (+)
G1517457 NA other downstream 1117105 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1366683 13187101 ~ 13188080 (+)

Expression


Co-expression Network