G1517176


Basic Information

Item Value
gene id G1517176
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11996301 ~ 11997659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736679
GTAAGAAAGTTGCCAGTTCTAAAGAGaaatgtgaaagagagagaaaagggaagaaacaaacaaataaatcaaGAAGATAGAAAAATAAAGGATTTTAAAGAAACAAGCACCAACGTTTCCTTCCgtttcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaa
>TU1736680
GTAAGAAAGTTGCCAGTTCTAAAGAGaaatgtgaaagagagagaaaagggaagaaacaaacaaataaatcaaGAAGATAGAAAAATAAAGGATTTTAAAGAAACAAGCACCAACGTTTCCTTCCgtttcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaatgacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaa
>TU1736688
GTAAGAAAGTTGCCAGTTCTAAAGAGaaatgtgaaagagagagaaaagggaagaaacaaacaaataaatcaaGAAGATAGAAAAATAAAGGATTTTAAAGAAACAAGCACCAACGTTTCCTTCCgtttcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaatgacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaa
>TU1736696
GTAAGAAAGTTGCCAGTTCTAAAGAGaaatgtgaaagagagagaaaagggaagaaacaaacaaataaatcaaGAAGATAGAAAAATAAAGGATTTTAAAGAAACAAGCACCAACGTTTCCTTCCgtttcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaa
>TU1736698
GTAAGAAAGTTGCCAGTTCTAAAGAGaaatgtgaaagagagagaaaagggaagaaacaaacaaataaatcaaGAAGATAGAAAAATAAAGGATTTTAAAGAAACAAGCACCAACGTTTCCTTCCgtttcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaatgacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatccactctctctaaaacaaagacatgcaccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaagacatcctccactctctctaaaacaaa

Function

NR:

description
adhesive plaque matrix protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736679 False 579 lncRNA 0.39 3 11996301 11997659
TU1736680 False 714 lncRNA 0.39 3 11996301 11997659
TU1736688 False 957 lncRNA 0.39 3 11996301 11997659
TU1736696 False 741 lncRNA 0.39 3 11996301 11997659
TU1736698 True 927 lncRNA 0.39 4 11996301 11997659

Neighbor

gene id symbol gene type direction distance location
LOC110497058 LOC106575722 coding upstream 70092 11885873 ~ 11926209 (+)
LOC118941095 LOC106575791 coding upstream 182069 11809043 ~ 11814232 (+)
trnas-cga-32 NA coding upstream 187311 11808909 ~ 11808990 (+)
LOC110495630 LOC106575789 coding upstream 187921 11803177 ~ 11808380 (+)
LOC118941042 LOC105005823 coding upstream 193563 11791601 ~ 11802738 (+)
LOC110527250 LOC106575686 coding downstream 10295 12007954 ~ 12021342 (+)
zswim2 LOC106574814 coding downstream 41083 12038742 ~ 12045602 (+)
dytn LOC106574817 coding downstream 51320 12048979 ~ 12060014 (+)
LOC110538823 LOC105019738 coding downstream 71390 12069049 ~ 12080939 (+)
LOC110527243 LOC102778049 coding downstream 96243 12093902 ~ 12161272 (+)
G1517174 NA non-coding upstream 1358 11993702 ~ 11994943 (+)
G1517150 NA non-coding upstream 54404 11940062 ~ 11941897 (+)
G1517101 NA non-coding upstream 134256 11861372 ~ 11862045 (+)
G1517060 NA non-coding upstream 154955 11838527 ~ 11841346 (+)
G1517095 NA non-coding upstream 158687 11837344 ~ 11837614 (+)
G1517110 ef1b non-coding downstream 69725 12067384 ~ 12068234 (+)
G1517202 NA non-coding downstream 88231 12085890 ~ 12086420 (+)
G1517204 NA non-coding downstream 91011 12088670 ~ 12088910 (+)
G1517206 NA non-coding downstream 91728 12089387 ~ 12089608 (+)
G1517019 NA other upstream 352543 11642789 ~ 11643758 (+)
G1517015 NA other upstream 361322 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 903747 10978682 ~ 11092554 (+)
G1516637 NA other upstream 979212 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 835992 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 936995 12934654 ~ 12936278 (+)
G1517457 NA other downstream 939864 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1189442 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2437103 14434762 ~ 14436120 (+)

Expression


Co-expression Network