G1517110 (ef1b)


Basic Information

Item Value
gene id G1517110
gene name ef1b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12067384 ~ 12068234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736595
AAGTTGAATTGAATTCAAGACAGGAAGCTGTCACCTCGTCATCAGAGCCAAACAGGTCCATGTCATCGTCGTCATCCTTTGAGTCTGCAGCTGTGTTGTCCTCCACACCGGAAGGACCATACTGGCCCAGGGGCTTCTTAACTCCTGGCAAACTGCTGCCCTTCTGGTTCTGGAATGACTTGATGTGGTTGTACCAGCGAAGAGCATGGCACTGGACTGTTGAGGGGGCTGAGGGGATTGCATCGAACACAGCCACGTCGGCCTGGGAGGGCACCCACCTGCACAGGGAGGAAAGTTAGAAGTCAGCATAGAATGAGGACAAttggatcctagatctgtgcctacagCACATTGCAGATATAAAAGTAATGTAGCGCAGATTCCCGTGATTTCATACTTGATAACCATCACGCAAGTCGCAGAATACTACCTGAGCATTCTGGACCTTCCAATTAAACCAAATACGCCCCCCCCGGTTCAGTACCCGAGCCTCACTAAATTTCACTCAACGTGTAGTGGAGTTACCTAGCCATTTTAGTTAAATATTCGACTTCC

Function

NR:

description
elongation factor 1-beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736595 True 555 lncRNA 0.49 2 12067384 12068234

Neighbor

gene id symbol gene type direction distance location
dytn LOC106574817 coding upstream 7370 12048979 ~ 12060014 (+)
zswim2 LOC106574814 coding upstream 21782 12038742 ~ 12045602 (+)
LOC110527250 LOC106575686 coding upstream 46042 12007954 ~ 12021342 (+)
LOC110497058 LOC106575722 coding upstream 141175 11885873 ~ 11926209 (+)
LOC118941095 LOC106575791 coding upstream 253152 11809043 ~ 11814232 (+)
LOC110538823 LOC105019738 coding downstream 815 12069049 ~ 12080939 (+)
LOC110527243 LOC102778049 coding downstream 25668 12093902 ~ 12161272 (+)
LOC110528736 LOC100693318 coding downstream 116475 12184709 ~ 12214234 (+)
LOC118941035 LOC106592175 coding downstream 146316 12214550 ~ 12216720 (+)
LOC110527236 LOC106575759 coding downstream 148480 12216714 ~ 12220754 (+)
G1517176 NA non-coding upstream 69725 11996301 ~ 11997659 (+)
G1517174 NA non-coding upstream 72441 11993702 ~ 11994943 (+)
G1517150 NA non-coding upstream 125487 11940062 ~ 11941897 (+)
G1517101 NA non-coding upstream 205339 11861372 ~ 11862045 (+)
G1517060 NA non-coding upstream 226038 11838527 ~ 11841346 (+)
G1517202 NA non-coding downstream 17656 12085890 ~ 12086420 (+)
G1517204 NA non-coding downstream 20436 12088670 ~ 12088910 (+)
G1517206 NA non-coding downstream 21153 12089387 ~ 12089608 (+)
G1517229 NA non-coding downstream 133476 12201710 ~ 12202138 (+)
G1517019 NA other upstream 423626 11642789 ~ 11643758 (+)
G1517015 NA other upstream 432405 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 974830 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1050295 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 765417 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 866420 12934654 ~ 12936278 (+)
G1517457 NA other downstream 869289 12937523 ~ 12942494 (+)
G1517545 NA other downstream 1118867 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2366528 14434762 ~ 14436120 (+)

Expression


Co-expression Network