G1517274


Basic Information

Item Value
gene id G1517274
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12346446 ~ 12348016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736832
TCtcttaacctgctacgttaattctcctaagtTGCTgagtaagttctcctaacctgctacgttaattctcttaacctgctacgttaattatcttaacctgctacgttaattatcctaacctgctgagtAAGTTCTCCTTacctgctacattaattctcCTAACTTGCTGAGTAAATTATCCTAatctgctacgttaattctcctaacctgctacgttaattctcttaacctgctacgttaattctcctaacttgctacgttaattctcctaacttgATGAGTAAGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTagcctgctacgttaattctcctaacttgCTGAGTAAGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTAGCCTGCTACgatagttctcctaacctgctgagtaaattctcctaatctgcttcgttaattctcctaacctgctgagtAAATTCTCCTAGCCTGCTACTAAAAGCCCCCCCA
>TU1736834
AGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTagcctgctacgttaattctcctaacttgCTGAGTAAGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTAGCCTGCTACgatagttctcctaacctgctgagtaaattctcctaatctgcttcgttaattctcctaacctgctgagtAAATTCTCCTAGCCTGCTACTAAAAGCCCCCCCA
>TU1736835
AGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTagcctgctacgttaattctcctaacttgCTGAGTAAGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTAGCCTGCTACgatagttctcctaacctgctgagtaaattctcctaatctgcttcgttaattctcctaacctgctgagtAAATTCTCCTAGCCTGCTACTAAAAGCCCCCCCACCACAAAACATCTTCCTGCGGCCATAATAGTGCCGTTGGCATTGTAAATAGTGGTTGATTGAATTTCAAATTCAAACTACAATGTGGAGGAGTAGATGAAAGTGATTTGTGTGTGAAAGTGATCTAAATGTAGCTAATGTCACAGATTACGGCAGTTTGGAATGTGACATTTAAGCCTTCATTAATATTTATAGACTGTATTTCATTGTGCCCTTACTGCCTGTATTCACATACATATCTACAGAAACCAAAGGAGTAATCATGGGCCAATCTTGCCCATTAAGAAAGGTAGTAAACATCAAAGGTCTGATGAGTTGTTTCCCTCCATTCTAATCTTGATTTAGCTGTTGTGACCTGGGGAAGTATGACAGATTAGTTGACTTTGCTAATTTGTCTCTTGGAAGTTTGTTTCATGTTTGTGTTTTTTCTTATGCTCCACGGTGTCGTAAAATGTATTTGATGACATTTTCCAAAGCTAACTTTGTATTCACCTTAGCATGTTGTCAACGATAGAGCACTTTCTTGTCTCTTATTGGgcagtggtagtgtgtgtatttTATTGAATCCTCTTGGCTGAGACTGGAGAAGGAGAATGCAATGCACATCGTCCGGTTTCATTTGGTTTTGAATAGATGGGAAACAGCTTTATTCAAatttgacttttcgtagcaggttaggagaacgtACTCAGCCGGTAAGGAGAATTAACGCAATCGGTTAtaagaattaggttaaggttggGAAAACAGTTAAGGTTAGCTAAAATGGCCCCAAAAAAATCTACTTTtgatgttaatttgacaaaagctggagcCCTTCTAGCCATGACTGTTTCATTTGACTAGAGGCACATGTCAGATAATATGGCTGCAGGCTACCTGTTCATTCCATGATGAGCTCCGTTGGGCTTCTTTCCTGATGTAGCTGGGGGTCACAGGAGGTACCAGGTCACATTCAGCACTCTGGTGTTCTGGGGCCACGCTTGACCTTTAGTGCAGTTGTGCAGGACAACATTCCTCCAATGCATAAATAAGAATATTCTTTATATGCTACAAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736832 False 512 lncRNA 0.40 1 12346446 12346957
TU1736834 False 229 lncRNA 0.43 1 12346729 12346957
TU1736835 True 1288 lncRNA 0.40 1 12346729 12348016

Neighbor

gene id symbol gene type direction distance location
LOC118941038 LOC106574879 coding upstream 1588 12343695 ~ 12344858 (+)
LOC110495542 LOC105019723 coding upstream 15878 12318790 ~ 12330568 (+)
LOC118941037 NA coding upstream 28853 12308955 ~ 12317593 (+)
LOC110495539 LOC106575646 coding upstream 37774 12287481 ~ 12308672 (+)
LOC110511883 eed coding upstream 65071 12275263 ~ 12281375 (+)
LOC110495532 LOC106574868 coding downstream 33409 12381425 ~ 12385624 (+)
LOC110527229 tuba8l2 coding downstream 42227 12390243 ~ 12404033 (+)
LOC110513922 stk16 coding downstream 56843 12404859 ~ 12415478 (+)
LOC118941034 LOC106575710 coding downstream 100546 12448562 ~ 12454072 (+)
LOC110527226 LOC106575709 coding downstream 111993 12460009 ~ 12467899 (+)
G1517256 NA non-coding upstream 60828 12285296 ~ 12285618 (+)
G1517254 NA non-coding upstream 73647 12272169 ~ 12272799 (+)
G1517116 NA non-coding upstream 100059 12245883 ~ 12246387 (+)
G1517233 NA non-coding upstream 141032 12204138 ~ 12205414 (+)
G1517231 NA non-coding upstream 143473 12202671 ~ 12202973 (+)
G1517276 NA non-coding downstream 6080 12354096 ~ 12356750 (+)
G1517278 NA non-coding downstream 9899 12357915 ~ 12359042 (+)
G1517279 NA non-coding downstream 11363 12359379 ~ 12360709 (+)
G1517277 LOC106575774 non-coding downstream 17290 12365306 ~ 12366088 (+)
G1517284 LOC106575774 non-coding downstream 19531 12367547 ~ 12376288 (+)
G1517150 NA other upstream 405341 11940062 ~ 11941897 (+)
G1517019 NA other upstream 702688 11642789 ~ 11643758 (+)
G1517015 NA other upstream 711467 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1253892 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1329357 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 485635 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 586638 12934654 ~ 12936278 (+)
G1517457 NA other downstream 589507 12937523 ~ 12942494 (+)
G1517545 NA other downstream 839085 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2086746 14434762 ~ 14436120 (+)

Expression


Co-expression Network