G1517276


Basic Information

Item Value
gene id G1517276
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12354096 ~ 12356750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736837
ACATAATTGCAGTGTGTCTTGGAAAAGCTTTTGAGATCGACTTACAGTGTTTATTGAAAAAAGAGGACTATGAATCTCTTTCCATCTGGATAAGGCTGGAATTTCATCCAAGCAGACACAAGCAAACATAGACAAAGTTGGCCCTGGCTGTCAAGGCATTGTACTGAAAACTCCCATGTGTCAAAAGACTGATACACATGGTTGGATTCAGTTACAGTAAGAGTACACAGCGGAAGCCTCTAGAATGATTCTCTCAGCCTTTTTAGACAAAACAAGAACACACGCAAATTGTATTACAAACATGCTAACAAGACCAATATTAAGAACCAGTCAGAACACTATCAAAAAATGTGATGTTCCTTTTATCCATTCGTAAAATACAAATTTTCTTTAAAAATAAGTTTTAGAATATGTATCTTTACATGCTTTTTAATAACTGCAACATTAAGACAGTTCAAATATGTAAAATATAGAGGAATGAGTTGGAATAGGTTCAATTCATATGACGTCATACCGTGTTTGAAAGCAAGGCAGAGATCATACATTCCCCTTCAACTGCTTCCCTCTATAAAACCACAAATAATCAGCAGAACTGCAAGTACTAACTTAGTAATAGTACAAATACTGTACAAGCTCAGGTGCActgcagacagatacagacagtgaagagacatTTCCATACAACACTGAAAAAGGCACAATTTGTAACTTTCTGGAAAGGTAAAGGTGGTCACCTCCAGTTTACAAACAAGTGCAGCGGCAGCAGCACATTGGACTGGAAATGAACGTTCCAGATTGTTCCGTTAATCCTCTCAGCATTAGACGTACATCTCATCACCACTCACACCTCTAGCTATCTTATCTTAAGTTCTTTGAATGATGGAAGGAGTGAATAACATTATAATGAATACATTttaacatttaaaatatatatataatgacgTAGCAATAGCAGTAGTAAAAAAGCATTCATTCTGCCATGATTTAAAAACAGTAAGGATAAAGATGGAGTCAGTTACTTAAGGTGCATCAGACAGACCAGTGTATGCTAGCTAGCAGACAGCAGATATAGAAATGTCGTTGTCACCGGTGTGCCAGGAAAAAAAGCCTTATTATAAACCAGGTAGTTTGGTCCTGTGTGCTGATTAGCCAAAACAGCATTTCAGCTGTgtgtatatcagacaatataccaACGGTATGACACAAAAATCTTTGTtcactgttctatttttgttggTAACTTATCTGTACCAGTTTataaagcaataaggcacctcaggggttagaggtatatagccaatatagcccagctaagggctgtatccaggcactccactttGCGTCGTGCcgaacagcccttagcagtggtatattggccattataaaccgggtggttcaagccctgaatactgattggctgacagccgtggtatatcacgggtatgacaaaactttTATTTCtactgctctaattaagttggtaaccagtttataatagcaataaggcacctcaagggtttgtgatatatggccaatataccacggctaagggctgtgtccaggcacttcgCCAACgcgtcatgcataagaacagcccttatccgtggtatattggccatataccacacccccctcgggccttatttcTTAAATATACAATGTGACTGCGGCGAGGAACAGTGATGTAAAGTAGCATGCTGAAGTCAGAAATGAAGACGTGGAAACGTTAAGCTTGAGTGTGAATAAACTGCTTGGTACTGTAATGCCGGCTGTCCCTAACGAAGCGGAATCAGGCGCAACCAGGAAGAACTGGTTCTTGTATTGGAGAAAGGGCATAAGAACCACATCCAAAGTACAGCTCCAGTGAAATGTGGACATCCATAAGACACCGATAACAAAAATAAGACGGAATAATATAACAATAAACTATATTACAAAGCCATATAAGGCGAAGCATTGATAAGATTATAGACCGTATGAACAGTGAGTTACAGCTTTATGTCAGAGGCACTGATTGTCAAACCATTTGACTTTGTAGTAGTGAGAATCCAGTGTGATGGAAAACAGGCCAGATAGTCCCTGTTTCCCTCCATGAAAATATCAATACAAAGAATTATTATAAAAAATGTCTAACATCAAACTACTttttatattttagtcatttagcagactctcttatccagagcgatttacaggagccATTAGGGTTCAGTGCCTTGTTCAAGGACACATTGACcttccagttactggcccaacgcttttaaccaccaggctacctgctgccccaatctAGCCTCAACTTCACAATAAAACACTCAGGGTTGACACATACTCACCTAGATTAAATTAGGATACAAATCTAGTTTGTTTCATCATTGTCATTCTTAGCACCACAGCTCTggttagtgtggtggtgtggtgtagtggtaatgtgtggtggtgtggtgtggtggtacgGTGTGATGGTACGGTGGGGTGGtaatgtgtggtggtgtggtggtgcggATGGGCtctcctcacacccctcctccaCTGCGGTCCACAGTCACAGGTCCCCTCAGATCCAGGCTCTCCtcagctgtcttcatcaggatgGCCAACCTGCTGTCAGACACCTGGCCCTTCTTC

Function

NR:

description
glycerol-3-phosphate dehydrogenase, mitochondrial-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736837 True 2628 lncRNA 0.41 2 12354096 12356750

Neighbor

gene id symbol gene type direction distance location
LOC118941038 LOC106574879 coding upstream 9238 12343695 ~ 12344858 (+)
LOC110495542 LOC105019723 coding upstream 23528 12318790 ~ 12330568 (+)
LOC118941037 NA coding upstream 36503 12308955 ~ 12317593 (+)
LOC110495539 LOC106575646 coding upstream 45424 12287481 ~ 12308672 (+)
LOC110511883 eed coding upstream 72721 12275263 ~ 12281375 (+)
LOC110495532 LOC106574868 coding downstream 24675 12381425 ~ 12385624 (+)
LOC110527229 tuba8l2 coding downstream 33493 12390243 ~ 12404033 (+)
LOC110513922 stk16 coding downstream 48109 12404859 ~ 12415478 (+)
LOC118941034 LOC106575710 coding downstream 91812 12448562 ~ 12454072 (+)
LOC110527226 LOC106575709 coding downstream 103259 12460009 ~ 12467899 (+)
G1517274 NA non-coding upstream 6080 12346446 ~ 12348016 (+)
G1517256 NA non-coding upstream 68478 12285296 ~ 12285618 (+)
G1517254 NA non-coding upstream 81297 12272169 ~ 12272799 (+)
G1517116 NA non-coding upstream 107709 12245883 ~ 12246387 (+)
G1517233 NA non-coding upstream 148682 12204138 ~ 12205414 (+)
G1517278 NA non-coding downstream 1165 12357915 ~ 12359042 (+)
G1517279 NA non-coding downstream 2629 12359379 ~ 12360709 (+)
G1517277 LOC106575774 non-coding downstream 8556 12365306 ~ 12366088 (+)
G1517284 LOC106575774 non-coding downstream 10797 12367547 ~ 12376288 (+)
G1517302 NA non-coding downstream 35028 12391778 ~ 12393361 (+)
G1517150 NA other upstream 412991 11940062 ~ 11941897 (+)
G1517019 NA other upstream 710338 11642789 ~ 11643758 (+)
G1517015 NA other upstream 719117 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1261542 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1337007 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 476901 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 577904 12934654 ~ 12936278 (+)
G1517457 NA other downstream 580773 12937523 ~ 12942494 (+)
G1517545 NA other downstream 830351 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2078012 14434762 ~ 14436120 (+)

Expression


Co-expression Network