G1517284 (LOC106575774)


Basic Information

Item Value
gene id G1517284
gene name LOC106575774
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12367547 ~ 12376288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736846
CCTAGAAACTACTACAGCTGTATAGCACGTCATCAGGATACCACTTGTTTTAGAGTAGGTACTGACCTGCAATGGTGACCAGGCCGCTGTCGCTGACGTTGACTATGTGGTTCCTGCAGATGGACTGGGTGTCTTTAGAATTGGGGTCAGTGACCAGAGGACGGATACCACTCCACGCTGCCaggacatctcctctcctcaCCTCTACATCAGGGCTGAGGTAGTTGCGGACTTCGTTCAGGATGAAGTTGATGTCTTCCTCCCTTGGGATGGGGTGGGCGGTGATGTCAGTGGGCGTGTCCGTCGTCCCGGCTATGGTCATCTTCTCCCAGGGCAGGAAGAAGATGACACGGCCGTCGCTGGTTGCCGGGTCCAGGAGACCCATGTTGTCAGGActgtaatAACCAGGGATAACTATGTGAACCCCAGCACTGGGCTGGCAGATGTTAGTGTTTTTCCCGTCGTCCATCTTCCTCAGAGAGTCCGTGAACGGTCCCGTGGCGTTAATGACACATTTGGCTCTGACGTCAAATTCATTTCctgtgataACGTCCCTGCAGCGCGCCCCACAGACCTTCTCCTTGCCCGTCCCTGCGTCTGTTTTCTTCAGCAGGTGGACCACCTCTGTGTAGTTAGCGATGGCAGCACCATGTCTGGCTGCTGTCAGGGCGATCGCCAGGTTCATACGAGCATCGTTATGCTGTCCATCATAGTAGACGATGGCTCCCACCAGCTTGTCTTTCTTCAGCATGGGGAAGAGTTCCAGAGCCTTGTTCTTACTGAGGACATAACTGCTCTTCAGACACTGGCCTCCAGCTACCAGGTCGTACATCTTTATACCAGCCCAGTAGTATGGCAGCTGCCACCATTTGTAAACAGGGAGCATGATGGGTAGTGGGGCAGACAGATGAGGGGCGATGTCTAGCAGGTTGGAGCGCTCGTGGAGAGCCTCTTTCACCATCATGTACTGTTCGTAATCTAACTTCATGATGGCCTTTTGGAGGTATCGTACTCCCCCGTGGATGAGCTTGGTGCTCCGGCTGCTGGTCCCCGATGAGAAATCATTCCTTTCCACCAGGGCAGTCTTGAGGTTGCGTGTGACAGCGTCTAAGGCACATCCGGAGCCCGTGGCCCCTCCCCCTACGACAAGGACGTCAAACTCCTCAGTGTCTTGCAGGGTGGAGAGCTGAGCCTGTCTGGTTGGGAGCTCATCTTTAAACGGCTGCTTTAACTCCCCCTCCGCCGCTACGTACGCCAGCC

Function

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736846 True 1260 lncRNA 0.55 8 12367547 12376288

Neighbor

gene id symbol gene type direction distance location
LOC118941038 LOC106574879 coding upstream 22689 12343695 ~ 12344858 (+)
LOC110495542 LOC105019723 coding upstream 36979 12318790 ~ 12330568 (+)
LOC118941037 NA coding upstream 49954 12308955 ~ 12317593 (+)
LOC110495539 LOC106575646 coding upstream 58875 12287481 ~ 12308672 (+)
LOC110511883 eed coding upstream 86172 12275263 ~ 12281375 (+)
LOC110495532 LOC106574868 coding downstream 5137 12381425 ~ 12385624 (+)
LOC110527229 tuba8l2 coding downstream 13955 12390243 ~ 12404033 (+)
LOC110513922 stk16 coding downstream 28571 12404859 ~ 12415478 (+)
LOC118941034 LOC106575710 coding downstream 72274 12448562 ~ 12454072 (+)
LOC110527226 LOC106575709 coding downstream 83721 12460009 ~ 12467899 (+)
G1517277 LOC106575774 non-coding upstream 1459 12365306 ~ 12366088 (+)
G1517279 NA non-coding upstream 6838 12359379 ~ 12360709 (+)
G1517278 NA non-coding upstream 8505 12357915 ~ 12359042 (+)
G1517276 NA non-coding upstream 10797 12354096 ~ 12356750 (+)
G1517274 NA non-coding upstream 19531 12346446 ~ 12348016 (+)
G1517302 NA non-coding downstream 15490 12391778 ~ 12393361 (+)
G1517311 NA non-coding downstream 41628 12417916 ~ 12418222 (+)
G1517312 NA non-coding downstream 43081 12419369 ~ 12419744 (+)
G1517318 NA non-coding downstream 62906 12439194 ~ 12439407 (+)
G1517150 NA other upstream 426442 11940062 ~ 11941897 (+)
G1517019 NA other upstream 723789 11642789 ~ 11643758 (+)
G1517015 NA other upstream 732568 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1274993 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1350458 11016765 ~ 11017089 (+)
G1517414 LOC106575752 other downstream 457363 12833651 ~ 12872163 (+)
G1517456 LOC106575727 other downstream 558366 12934654 ~ 12936278 (+)
G1517457 NA other downstream 561235 12937523 ~ 12942494 (+)
G1517545 NA other downstream 810813 13187101 ~ 13188080 (+)
G1519096 NA other downstream 2058474 14434762 ~ 14436120 (+)

Expression


Co-expression Network