G1517414 (LOC106575752)


Basic Information

Item Value
gene id G1517414
gene name LOC106575752
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12833651 ~ 12872163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736988
TGTAATGTAGTTTAATGTTGGTATGTGATAACTGGACATtcaaacaaaacatgtttttttctttaccTTAAGTTACTTGGTCTTGGATACATTTTGTGAAAAACAATGATAAACCACACAACAATGTTTATTGCCCATAATTCCCCAAGCCTCTTTAATGATtggttctcctctctcctttgtcTCCCTCAAACCCACATCATTGAGTGCATTCTACCTGCCCCCCtcgtcttcctcttccctccctccttggGGAGAAACTTCCCCATGACCGCCCGGATCCAGTCGATGTACTTGGACACCTGCGTGTAGATGCCGTACTTGCCCTCACGGGCGCACCCCTCGCCCCAGCTCACCACACCCGTCACGAACCAAGTGTCCCCGTAACGGGTGACGTGGGGTCCTCCGCTGTCCCCCTGGCACGCGTCCTTCTTCTCCTTATCGTAGCCGGCGCAGAACATGCGGTTGGAGATCTTGTGCTGGCTGGACTGAAGGCAGGTGGCCCGGGGTACGTAGGGCACGGTCAGACGCAGCAGGATGGTGGACGGCTGCTTGGCCTCCCCCACACGGCCGAACCCacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaacactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaag

Function

NR:

description
coagulation factor X-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736988 True 905 TUCP 0.51 2 12833651 12872163

Neighbor

gene id symbol gene type direction distance location
LOC110527205 pcid2 coding upstream 4101 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 179895 12622325 ~ 12653756 (+)
LOC110497019 LOC106574742 coding upstream 223271 12600823 ~ 12610380 (+)
LOC110527213 LOC106575703 coding upstream 233316 12571911 ~ 12600335 (+)
LOC110527211 ipo5 coding upstream 264226 12552573 ~ 12569425 (+)
LOC110495518 LOC106574650 coding downstream 2314 12874477 ~ 12879111 (+)
LOC110495515 creg1 coding downstream 10348 12882511 ~ 12885631 (+)
cd3z cd3z coding downstream 13932 12886095 ~ 12898735 (+)
gp91phox cybb coding downstream 202901 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 230466 13102629 ~ 13132209 (+)
G1517410 NA non-coding upstream 28108 12789545 ~ 12805543 (+)
G1517409 NA non-coding upstream 47676 12774212 ~ 12785975 (+)
G1517408 NA non-coding upstream 68444 12763961 ~ 12765207 (+)
G1517386 NA non-coding upstream 114652 12718775 ~ 12718999 (+)
G1517353 NA non-coding upstream 114938 12718082 ~ 12718713 (+)
G1517418 NA non-coding downstream 8573 12880736 ~ 12881992 (+)
G1517416 NA non-coding downstream 26647 12898810 ~ 12902980 (+)
G1517452 NA non-coding downstream 52236 12924399 ~ 12924636 (+)
G1517454 NA non-coding downstream 56761 12928924 ~ 12929968 (+)
G1517458 NA non-coding downstream 75208 12947371 ~ 12956518 (+)
G1517150 NA other upstream 892546 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1189893 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1198672 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1741097 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1816562 11016765 ~ 11017089 (+)
G1517456 LOC106575727 other downstream 62491 12934654 ~ 12936278 (+)
G1517457 NA other downstream 65360 12937523 ~ 12942494 (+)
G1517545 NA other downstream 314938 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1562599 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1626623 14498786 ~ 14499137 (+)

Expression


Co-expression Network