G1517417 (LOC106575738)


Basic Information

Item Value
gene id G1517417
gene name LOC106575738
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12841383 ~ 12854300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736991
CTGCGACCACCATCAGGTCCTTGGTGTCTCTATCCACGACACAGTGGGCAGCAGTGATGACCCAGTCAGGATGAACTATGACCCCACCACACAGACTAGTGCCTTTATGCTCCAATAGGACCTGCAACCACCAGTCCCATCACAAAGACAAATTGGCCACTCATCCATCACATCTCATTGTACATAAACCAAAATAATACTGTCTAATGTCATATAATGCCTAATGGAAGAGGTGGTAATAGATACTAACCTAGTTAATAGTACACCCTTTGACTTCAAGGATAGTGGTTGTATGGGAATGACTGTGGTTTAGTTATTCTACCAACTATGCCACATAATGCCCTGTGTGGCTTAGTTGGTAGATCATGGTGCTTGCAATTCCAGCATGGTGGGTTTAATTCCCATGGGAGACAAGCACAAAAAATGCACTCACTACTCTAAATCcctctggataagaatgtctgctaaattacGAAAATGTAGAAGGGTAGTATTGGCCAATCAAATGTGAAAGAGGTGGATGGATCCATTGTGCTCTCCAGCCAGGCGTTGATGTGTTACCTGCCATGGACAGGCTCCTTTGGGACAGTGGTTCCCACCGACTAGTTTGACTCGTGCCTGGCTCATCGGAGCTTCCAAGCCTGGGATTTTACCACACGGATACTGAACTGAtaatagacagacagacgagtTGTTGTTTCTAACTCTATTCATACATCAACAAATGCATGCTGGCTCCTTTTGGTTCTGTAAATATTACAGTCTGTTCGTAACAAACAGGGATTTCCCGTCTTTAACAAAACATCTGGGCTCATCTACTGTCCGTTACAGTTAGTACCTTGGGCAACACACTCTCTTCCGTCCTCTCCCAGGGCATAACCAGGAGCGCAGGAACACTTGCGTCTTGACCCAGAACTGTTACAGAAGTGCTCGCACTCCCCGTTAAGGGAGAGGCATTTCAGGGTGTCCTCAAACACTACAGTATGTTGGGAGAAAGGGGAAACGCAAGTAGGATGAGCAGAATGCGGTCAACATATCATATCACTAGCAAATGTTGGCAACACTTCACATTAGGGTGCTCTTACTACTGCGGAATTACAATAAACTATTGGTATGAAACTATTGTGAAAACCGGTGTTGCTTAATCCTGGTCCTGGAAACCCAAagggggtgcacattttggtttttgccctagcactacacatctGAGCACACATACTTTCTTaagacttatttttcttaaaactgcattgttggttaagggcttgtctgtaagcattttactgtaaggtctgttgtattcggagcatgtgacaaaaacattagatttgattcaactaatcaactcATTATCTAACATTtgattagtggaatcaggtgtgcagtgctagggcaaaaacagaaatgtgcacccctttgggaccccaggaccaggattaagaaacactggcGTAAACTATTGGTATAAAAATGGCAGCTAGGAATTCTCTTCCTACCTGTCTGACAGTATTTCCCTTCATAGCCTTCCAGACACTGACATGTGTAAGCCTCTCCCAGGGCATAACCAGGAGCGCAGGAACACTTGCGTCTTGACCCAGAACTGTTACAGAAGTGCTCGCACTCCCCGTTAAGGGAGAGGCATTTCAGGGTGTCCTCAAACACTACAGTCTGTCTGACAGTATTTCCCTTCATAGCCTTCCAGACACTGACATGTGTAAGAGTCATCCATGTAAACACAAGTTCCATTGTTTTTGCATGGGTTGACCAGGCAGGGATCCTGACCTTAGAGGGATCAATAGGGTAAAGGATATGACATTTGCTATTTGACATGCTGGACATTTCTTGTGCAAATAAATTAGGAATGTGATAACATGTATGTTATTACCATATTGGATTTTATACAACAATATAATTAGCATTTTATGAAAATGAATGAAAGCAATACTCTATCATATATTTTAGGCTGGTTGGAATTTTTTGTGTACAGTCCACATAGAAAAATCTGATTTACCCGTGTATGTCAACCAAAACCTTTTCTGTGGAAACAAACCATACATAGTCAGTTTTAAGAGTTCTCTGGAATTCTCACATGTTCCTATGCATTGCTAAATATTTCATTAAATTAAATCAAAATAGTGCTTCAATTAAAGTAATAGCAAATATTTCACCAAGTGAAATTACTACAAAATTGCACCGTTTGGGCGTCGTCCTCGAAAACTTCCCGAGCCTCTTCATAGTTACAAATTTCCTCGACACACTCGCGCTCGAGATTGCCCTGTTTCACCTCCTCGAAGTAGCCGCTGTTGGCGCGCCTTGCTCTGTCAAGCACCAGGTGCGCATCATCCTTCTTCAAGAAGACTTAAACATCGAATGACAAACCAGCGGCAGAAATGACAGTTGAAATGGCCCAAAGTGCACAAAATGTTTTCAGCAGCATCGTGGCGGACCTGAATCACCCAGAACTGGAACGATTTGAGGTAAACAATTCCAGCTCATATGACTCCCACTCACTCCAACagctcactcccactcactccaaCAGCTCACTCCCACTGCTCTGCAAACAGTTGCCACATCTGGGTGATGGTGACCAGACCTGAACCAGAGGATTAGGCCTATGTCTTACACTACATGGACAAAagaatgtggacacaccttcaaatgagtggattcggctatttcagtcacaccagttgctgacgtgtatacaatcgagcacacagccatgcaatctccatagacaaacaatgtCAGTAGAATGGACCGTACTGAGCTCAGTGAGCTCAGTCAGTTCCTCAAATGTCTGCTCTGTTAGAGCtgggcaactgtaagtgctgttattgtgaagtgtaaactTCTAGGAATAAGAATGTCTCAGCCggtaagtggtaggccacacaagctcacagaactggaccgccaAGTCCTTAGCGCTTAAACAAATTCTGTCCTcggctgcaacactcactaccgagttccaaactgcccctgggaGCAAAATCAGCGcaagaactgttagtcgggagcttcatgaaatgggtttccatggccgagcagatgcacaaaagcctaagatcac

Function

NR:

description
PREDICTED: coagulation factor X-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736991 True 3079 lncRNA 0.44 4 12841383 12854300

Neighbor

gene id symbol gene type direction distance location
LOC110527205 pcid2 coding upstream 11833 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 187627 12622325 ~ 12653756 (+)
LOC110497019 LOC106574742 coding upstream 231003 12600823 ~ 12610380 (+)
LOC110527213 LOC106575703 coding upstream 241048 12571911 ~ 12600335 (+)
LOC110527211 ipo5 coding upstream 271958 12552573 ~ 12569425 (+)
LOC110495518 LOC106574650 coding downstream 20177 12874477 ~ 12879111 (+)
LOC110495515 creg1 coding downstream 28211 12882511 ~ 12885631 (+)
cd3z cd3z coding downstream 31795 12886095 ~ 12898735 (+)
gp91phox cybb coding downstream 220764 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 248329 13102629 ~ 13132209 (+)
G1517410 NA non-coding upstream 35840 12789545 ~ 12805543 (+)
G1517409 NA non-coding upstream 55408 12774212 ~ 12785975 (+)
G1517408 NA non-coding upstream 76176 12763961 ~ 12765207 (+)
G1517386 NA non-coding upstream 122384 12718775 ~ 12718999 (+)
G1517353 NA non-coding upstream 122670 12718082 ~ 12718713 (+)
G1517422 NA non-coding downstream 2214 12856514 ~ 12877270 (+)
G1517420 LOC106574661 non-coding downstream 10230 12864530 ~ 12865350 (+)
G1517418 NA non-coding downstream 26436 12880736 ~ 12881992 (+)
G1517416 NA non-coding downstream 44510 12898810 ~ 12902980 (+)
G1517452 NA non-coding downstream 70099 12924399 ~ 12924636 (+)
G1517150 NA other upstream 900278 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1197625 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1206404 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1748829 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1824294 11016765 ~ 11017089 (+)
G1517456 LOC106575727 other downstream 80354 12934654 ~ 12936278 (+)
G1517457 NA other downstream 83223 12937523 ~ 12942494 (+)
G1517545 NA other downstream 332801 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1580462 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1644486 14498786 ~ 14499137 (+)

Expression


Co-expression Network