G1517420 (LOC106574661)


Basic Information

Item Value
gene id G1517420
gene name LOC106574661
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12864530 ~ 12865350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736994
gagtaggtgagtcccCTGAAGATAGCCTACCTGAGTAGCTCTTCCAGAACTCCTCCTGCATAAAACAAGAGAGAGGGCTATTTAAAAAGACTCTAATGTTCTGGGACAAATATGGAGAACCTACCTCCTCAGATTCCATCTGATCATTCAGTTTAAACTCACCAATTGTTCGGGGAGGGTGAAGATCTCCCGTGCCTCCTCGTAGCCACATTGCTCCTCCAGACACTCTCTCTCCAGGTCTCCCAGTCTCAGCTCCTCCAGCAGGCTGTTAGCACGCCGCGACCGCTGATGATGGAGCACCTCATTGGCCTCCTGTGTGCTCAGGAACACTGGAGCTGCTCCAGGGAGTCCGGTGCAGGCTGGGATATAGAGGACTAGCAGGATAAGGTGTCTGAGCTGCACTTTCAGAGCGTCCGTGGTCGTAGACGACTCCATTACTGAGCTCTCAGGGCTCAATCCAAGTTCAGTCCTCCCACAAACACATActccacaaacacacgc

Function

NR:

description
coagulation factor VII-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736994 True 501 lncRNA 0.52 2 12864530 12865350

Neighbor

gene id symbol gene type direction distance location
LOC110527205 pcid2 coding upstream 34980 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 210774 12622325 ~ 12653756 (+)
LOC110497019 LOC106574742 coding upstream 254150 12600823 ~ 12610380 (+)
LOC110527213 LOC106575703 coding upstream 264195 12571911 ~ 12600335 (+)
LOC110527211 ipo5 coding upstream 295105 12552573 ~ 12569425 (+)
LOC110495518 LOC106574650 coding downstream 9127 12874477 ~ 12879111 (+)
LOC110495515 creg1 coding downstream 17161 12882511 ~ 12885631 (+)
cd3z cd3z coding downstream 20745 12886095 ~ 12898735 (+)
gp91phox cybb coding downstream 209714 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 237279 13102629 ~ 13132209 (+)
G1517417 LOC106575738 non-coding upstream 10230 12841383 ~ 12854300 (+)
G1517410 NA non-coding upstream 58987 12789545 ~ 12805543 (+)
G1517409 NA non-coding upstream 78555 12774212 ~ 12785975 (+)
G1517408 NA non-coding upstream 99323 12763961 ~ 12765207 (+)
G1517386 NA non-coding upstream 145531 12718775 ~ 12718999 (+)
G1517418 NA non-coding downstream 15386 12880736 ~ 12881992 (+)
G1517416 NA non-coding downstream 33460 12898810 ~ 12902980 (+)
G1517452 NA non-coding downstream 59049 12924399 ~ 12924636 (+)
G1517454 NA non-coding downstream 63574 12928924 ~ 12929968 (+)
G1517458 NA non-coding downstream 82021 12947371 ~ 12956518 (+)
G1517150 NA other upstream 923425 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1220772 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1229551 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1771976 10978682 ~ 11092554 (+)
G1516637 NA other upstream 1847441 11016765 ~ 11017089 (+)
G1517456 LOC106575727 other downstream 69304 12934654 ~ 12936278 (+)
G1517457 NA other downstream 72173 12937523 ~ 12942494 (+)
G1517545 NA other downstream 321751 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1569412 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1633436 14498786 ~ 14499137 (+)

Expression


Co-expression Network