G1517418


Basic Information

Item Value
gene id G1517418
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12880736 ~ 12881992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736992
GCTCTCTAAAAGGTACCCAAGGTATGGTAATGGACTGAGATGTCCATCAATGGCATCCTTCAGGACATCCATTTTTTGCCATAGGGTTGACTACTCTGCTGCAAATTGATGTTAAGAGGTATACCAGATTGTCCTAAAGCTTGACAGGATCTGTTTGCTCTCCCTCAAATGACTTCACTGCAACTTGTACGTCAGACAGGATTGATTTCAAGAACGTCAGGTAGACATAGTTGGTCTTGTCCATGTATGTGGCGTGGAGCACATCCGCCATGTAGTAATGCTCACTGGCCTTGGTCACCTCAAAGTGGagtttcagttcttcccactggCTCAATATACGAGTTACCGCAGGCTCAATCGATAGCCAACGTGTGGCACACACTTTGGTGATCTGCAGAGGTTTCTGGCCACAATTAATGGTAACATACACTGCTTTGTACGCCTCGTGCCGTTTTGGGGAAATCGAAAACCAGTTGTAGGTTTCCCTGATTAAGTACTCAACACTCCTAGGGATAGTTTCTTTAGATACTACACTGACAGCCAATTGTAAAGAATGGCACACACAGCGGATGAGTACCGAATTGGGCAATGCACATTCTTCCTTTAAAATCTTGTGCATCCCAGTCATTACGGACGCATTATCAGTGCCAATACCCTGAATATTCTATTTTTTAAGGTTACACTTCTCAAGAAACTCAACTACCACCTTTACTATTGATCTGGCATCACCCCCCTCCAATTCAACCAGCCTGAGAAATGTGGACCCAACGGTTATTTTTTTAGCACTGAAATACTGAATCACCACATGCAGGTATTTCGAGACTCTGACATCAGTGGACTCATCCAAATGGAGATTGAACTTCTCATCCCCCACATCTGATGTTACCCTTTTGAGAAAACAAGGAGCCAGTACTCCCCTAATCATTTCTGTGCACTTGGTGCAGTGCATTTGGAAGTTTGTTGCTGCCACAGAATCTGGGCAGCTTTGCAAGCCATACCTAAATGGTTGCATGCTAGCATCTAACAATGCTCTGCAATGGCCATTGCCATAGTAGCTTCTGCCCTTTTGTAGTCATCCACTTTCTTAACCAACTGTGGTAATGTAGACTGCGTTGTGGGGTTGTACGGTTTTGCTTTATTTATATGCTTTGCTGTAGCACAATGTTTTTGATGTCATACATTTTTGCAAGCATGTCTGATTTGCACTACGCACAGTATGCCCGACAATCATCCCCAATTACTGGCTTCAGCCACCTT

Function

NR:

description
uncharacterized protein LOC110527132

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736992 True 1257 lncRNA 0.44 1 12880736 12881992

Neighbor

gene id symbol gene type direction distance location
LOC110495518 LOC106574650 coding upstream 1625 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 51186 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 226980 12622325 ~ 12653756 (+)
LOC110497019 LOC106574742 coding upstream 270356 12600823 ~ 12610380 (+)
LOC110527213 LOC106575703 coding upstream 280401 12571911 ~ 12600335 (+)
LOC110495515 creg1 coding downstream 519 12882511 ~ 12885631 (+)
cd3z cd3z coding downstream 4103 12886095 ~ 12898735 (+)
gp91phox cybb coding downstream 193072 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 220637 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 251125 13133117 ~ 13134843 (+)
G1517422 NA non-coding upstream 3466 12856514 ~ 12877270 (+)
G1517420 LOC106574661 non-coding upstream 15386 12864530 ~ 12865350 (+)
G1517417 LOC106575738 non-coding upstream 26436 12841383 ~ 12854300 (+)
G1517410 NA non-coding upstream 75193 12789545 ~ 12805543 (+)
G1517409 NA non-coding upstream 94761 12774212 ~ 12785975 (+)
G1517416 NA non-coding downstream 16818 12898810 ~ 12902980 (+)
G1517452 NA non-coding downstream 42407 12924399 ~ 12924636 (+)
G1517454 NA non-coding downstream 46932 12928924 ~ 12929968 (+)
G1517458 NA non-coding downstream 65379 12947371 ~ 12956518 (+)
G1517459 LOC106575727 non-coding downstream 66315 12948307 ~ 12948739 (+)
G1517414 LOC106575752 other upstream 8573 12833651 ~ 12872163 (+)
G1517150 NA other upstream 939631 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1236978 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1245757 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1788182 10978682 ~ 11092554 (+)
G1517456 LOC106575727 other downstream 52662 12934654 ~ 12936278 (+)
G1517457 NA other downstream 55531 12937523 ~ 12942494 (+)
G1517545 NA other downstream 305109 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1552770 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1616794 14498786 ~ 14499137 (+)

Expression


Co-expression Network