G1517416


Basic Information

Item Value
gene id G1517416
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12898810 ~ 12902980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736990
ATGATGTTTATAACAAAGTTACAGTAAGAGATTTTTCATATACATttgtaagtaaaaaaaaaaacgtaatccCCCAAATACAGCAGACAAACAGGTCGACAAGATGGGACATAGCTAAACGACCACGGTCTCCCTACGTTGTTCCCGTGACAACAGTGTGGCGTGATAGTAGTTGATATAGCAGTAGTAAGCTAGTATACTGTTGAGTGGGTGTGTTCATCATCTATGTAGTCTGCCAAGTAGTGACATCACACCTTGCATTGCCACAACCATGGGTGTCACCACCTAGTGTTAGTGTGACAACTGCTACCTCACTAAACGAGACAGGAGGAAGTAGGGACCAGATTTGGAGTGGTGTACTGTAATCCGTTATGTTATCAGAAAAAATCTTGTAATCAGAttatacttttgaaaaactagatgagtACTTCTTGGTTTACAAAAATGTTAcattgacacctttctgttttatCAATTACATTAAATTAGGCATTGAAAAGCATTTACGTTTATTTcccctgagcgagtctgaccacaagtcagagaccactatgacacAAATGTGTTTGGATCATTTTTGTCaacttctaatgcctcttaaggggaaagtaatctaaaagtaatcaGATTGTTACTGAGTAATCTAAGTTAACTGTTTACAATTTCAGATAACTAGTagcggattacatttagaaagtaacctacccaactgTGTGGGTGTTAGAAAAAGATATGCAGGACTAcacgttttcttttttttgttaaaaaaaagtattaaatCACAATACACAGGCAGTGAATCCTAAAACATACAAAAATACCTTACATTTGACCATCTACCAACAGTAAGATCATTCTGCATTGACATCCATACtgaatgagaaaaaaaacaattaagcTCTTTTCAAAACACATTTTCTGCTTGAAGATATCTTCCCTGAAATGTACCATAATATACATTGCGCTTTGGATGCCAGTGCTTGGTTCTGTATCGGTCTACTACAGTATAAATCCGCTGTAGGGACGGGAGTAGAAAGGGAAGCGTGAAGAGAGTGGGAAAGACCGTCAGAGGTCGGGATTCAATCCGGTCCTAGGTTATAAAGGTATTACgtattttaaaggcaatgttccctgCTTTTGCAGAGGTCCCATTCACGATAAATGCTGCATATGTTCAGCTCAATCAGAAAGTGCCTTTAAAAGCCACAACGCCTATAACCCTGCGATCGATTGAATCCCAGCCAGAGTATTCTTTGGTATTTGTGTAGATGAAACATTTACTTTGGAATACAGCTGGAGGAAAATATCTGCCCTCTACTTGACGTAGCAACAAAACAAGCAGATGTTAAGGGGTGGGCAATCATTTAGACTCACATCGGGATTTCAAAATTCAGCGGAGGGCCGCACTTTTTTGGGGGCCGATTTGTTCGGGCAAAAGCAATTTGTGTGCCAGAAAAAGGGCAGTTATTTTAAAACGTAAAAGGTCCATTATAATTTAAAGTTGTAAACGTTAAGTTTCCTGGAGTGTTTTTTTCCTCTGGCCGTATGTTGCCGACCCCTGCATTACTTGGCGTACAAATAAAACTAAGACAATGTGTAAGAGATGTGATGACTAACTGCACAACATTCAGGTAAAGCGACTACAAAGGACAGCAGCACCACTgatctaagtgtgtgtgtgtggtagagcgTTATGTCTTTGGTTTCTTTTGAGATGCTGCCTCCTGGTGTTGAATAGGTCCAACAGTCCCAGATGAACCCAGCACTAGacagcctgccccccccccccccccaagactgGAACCATCAGTTAGGATGTCAGTAAAGTTTTAAAAACAGGTTTTCTAACCTGCATTAACAAGCAGTAGTAGTCTGCAGATACCATATATCCCATCCATTAAGGccacaaaataaaacattttctccCTTGTGATGTAAACATAAAGGCATGAAAAGTACACATTGTGAAAACTTCTGGCTTTACATGTTTTTGATAAAACATCACACAACACAAAAGTAAAAAACAGAACGCAGTACATTTCCTTAGTTACAAGAGGGCCATAATGGAAACAAGCATTTGGACTTTGTGTTTATATCCTCAGTTTGGTATGTGTATCTGTTGCCAGgtcaaacaaaaaaaatcatggattttaaaagttgtcaaatcaaatcattaAACTGCAAGTCAACAGGCCAGAAACAGATCAGTCCACACCCTGTGGTTTACTTTGGTCCAGAGTCACACTTAAACATTTCTATCCTACAGAGGATGTTAAAGATAATGCACTACATTCAATTACAAGAACCTACTAGTTCAGATAGAAAACAGGAATAtttcatgtatatatatattacttgcATGTGAATATCGAGCGCTAGACGTAAAGTAAAAATGGCCCTCGGATACATATTTCAAAAACTTCTCAATATAGCAGAGCAAACCCACAACAAAAAGACTCAAGCAGAGATACAACTACATTTCCCATAAGGCTTTGCAGGAAACCCCcagaacaaacacacaccaccaaGAAAAGAAGATCTACCCATCAAACCAGCTACAAAATGAGAACGCTAATGCTTTGGTATGTAGGATCAGACAAGAATAAAGTACCATTTGGGTGAATACATGACATAATAATAGCAGTAGTACTGGACACTGCAGTTACAGTGCATGTGGAGTCAGCTCATGTTGTGTATCAAGATATGATTCTCTGCTGTCGTCACCATTTCAAACGTACAGCAAAGCAACAAAAAGACAGGTCAACATATCTACATTCTTAGAATTTATGGTTTCAGTTTTGCTTGACTATATTGTTTTCTTGCTGCTGAGGTATTTCAATATATTATGTTGAGTCAGTACTGAATGCAGTACCCGGGGCTCTAGTGGCAGCATATTTGGTTTTACGAGAAAGAATAAGCTCAGAGAAGGCCAGACCTGGACAATCTCCTTTAACTTGTACATGCAGTGACTCACTGGGAAATGGCTGTCCTGAGAATTACTTCAAGATCATTACTCTTGTAAATACCTTCTTGAACTCATGTAATCCAAGGCAGATTCAGTATGGGCCATGCAACCCCACtatactactgacaccttacCCTACCTTCTCCAGACACTCTTTTTGGTATGCTGCCTGTCTTCTATAGACCTCGGCATAAGGGAGGAGAATATCAGAGAGAAACATCTTTGTTAGTCTTTGGAAAGTCCCCTTCAAAATATTGCATTAATCTCTCCCGCTCTGGAGAGGTCCATTAGATAAATCCCTACGCTACATTACGctagggtgatgataatagtgtACTAGACTTAGCTCTATAATATTTTTTGGTTGGATAAAAGGTTGGATAAAGGACATTCCAAGTTCTCTTGAAGTCCACTGTTTGTAACTCTTCCCAGAGACTGCAGTAAAGCTCTTCCATAGCAAGCCTGCACCCAGGCTCTCTCACGGCCTAGTGATTCTTTTTAAAGAGTTGGAACTATGTTGAAAAACATGTTAAAGCAACAAAACTTTTAATAAAAGTTTTGAAAAATGTACAAACGGCAAATATCAGAGCACACAACTAACCGCACAAAGAACATTTTAGGTCACATGGGAAAACAAGCAGAGAAATCTAATCTTTAGTTGTAAATCTGATGTCAACGGTCCAGGCCTGTACAACACGCCCTCAGGTAAAACTTAAAATTAGAGAACCTAACACACAGATCATCATGAGATCTCTCTAGAAGTTAAACCAAGTCAGTTTCATTCAATACTCAGCAAAATAAAATCAAACGCACATTTTTGGTTTTAGAAGCAGTTCTGAGGAAAAAGAGATTCTATTGCCAAATCTCAATCAATCTTTGAAAGGACCGTTAGGCCCCCTTGTGGCAGAGATAGGGAGGAAAACATCTTAAGAATATTTTTCCAACAACAACTTTTTGGTGGTAGCAAAAAGAACAAAGATTAAATAACGACCAATGAAGAGGAAGAAATGGGGAGCGACCCGCCCCGCGAGTTCATTCATTGGGCCTTAGAGGCTCTGACGATGGTGTTGACTGGTGTAGTTGCCGTGGTGATGGTGTTGGTGCCAGCGGTGAGTTGCAGGCTGAGGGCACTGGCAGGGATAAAGCTGACAGGGTTACTACCCAATAAGGACAGGCTCTGGGGGTTCAGGAAGAGTGGCGTGTTCA

Function

NR:

description
POU domain, class 2, transcription factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736990 True 4171 lncRNA 0.40 1 12898810 12902980

Neighbor

gene id symbol gene type direction distance location
cd3z cd3z coding upstream 75 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 13179 12882511 ~ 12885631 (+)
LOC110495518 LOC106574650 coding upstream 19699 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 69260 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 245054 12622325 ~ 12653756 (+)
gp91phox cybb coding downstream 172084 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 199649 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 230137 13133117 ~ 13134843 (+)
LOC118941100 NA coding downstream 487049 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 547177 13450157 ~ 13451678 (+)
G1517418 NA non-coding upstream 16818 12880736 ~ 12881992 (+)
G1517422 NA non-coding upstream 21540 12856514 ~ 12877270 (+)
G1517420 LOC106574661 non-coding upstream 33460 12864530 ~ 12865350 (+)
G1517417 LOC106575738 non-coding upstream 44510 12841383 ~ 12854300 (+)
G1517410 NA non-coding upstream 93267 12789545 ~ 12805543 (+)
G1517452 NA non-coding downstream 21419 12924399 ~ 12924636 (+)
G1517454 NA non-coding downstream 25944 12928924 ~ 12929968 (+)
G1517458 NA non-coding downstream 44391 12947371 ~ 12956518 (+)
G1517459 LOC106575727 non-coding downstream 45327 12948307 ~ 12948739 (+)
G1517465 NA non-coding downstream 57161 12960141 ~ 12980331 (+)
G1517414 LOC106575752 other upstream 26647 12833651 ~ 12872163 (+)
G1517150 NA other upstream 957705 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1255052 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1263831 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1806256 10978682 ~ 11092554 (+)
G1517456 LOC106575727 other downstream 31674 12934654 ~ 12936278 (+)
G1517457 NA other downstream 34543 12937523 ~ 12942494 (+)
G1517545 NA other downstream 284121 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1531782 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1595806 14498786 ~ 14499137 (+)

Expression


Co-expression Network