G1517452


Basic Information

Item Value
gene id G1517452
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12924399 ~ 12924636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737029
TGTAAAAATCTTGTTTATCCAAGCCATGTTTTTTACTTAGGTCCTGGAAGTTATCTAGGTCCCCATTCCTTATAATTGTACTGAATGATGTGATGCCTTTCTGCGTCCATTGTTTAAATCTGCTGTCCTGAGTTGCAGGGATGAAGCTGGGGTCGTATGCGGGCCAACTCAGCAGTTTGATCTCTCTGTCTAAATTATTTTGCTTAACTACCCTAAACCATCTCTTCAGAGAGAAATG

Function

NR:

description
LINE-1 reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737029 True 238 lncRNA 0.41 1 12924399 12924636

Neighbor

gene id symbol gene type direction distance location
cd3z cd3z coding upstream 25664 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 38768 12882511 ~ 12885631 (+)
LOC110495518 LOC106574650 coding upstream 45288 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 94849 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 270643 12622325 ~ 12653756 (+)
gp91phox cybb coding downstream 150428 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 177993 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 208481 13133117 ~ 13134843 (+)
LOC118941100 NA coding downstream 465393 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 525521 13450157 ~ 13451678 (+)
G1517416 NA non-coding upstream 21419 12898810 ~ 12902980 (+)
G1517418 NA non-coding upstream 42407 12880736 ~ 12881992 (+)
G1517422 NA non-coding upstream 47129 12856514 ~ 12877270 (+)
G1517420 LOC106574661 non-coding upstream 59049 12864530 ~ 12865350 (+)
G1517417 LOC106575738 non-coding upstream 70099 12841383 ~ 12854300 (+)
G1517454 NA non-coding downstream 4288 12928924 ~ 12929968 (+)
G1517458 NA non-coding downstream 22735 12947371 ~ 12956518 (+)
G1517459 LOC106575727 non-coding downstream 23671 12948307 ~ 12948739 (+)
G1517465 NA non-coding downstream 35505 12960141 ~ 12980331 (+)
G1517467 NA non-coding downstream 37693 12962329 ~ 12968558 (+)
G1517414 LOC106575752 other upstream 52236 12833651 ~ 12872163 (+)
G1517150 NA other upstream 983294 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1280641 11642789 ~ 11643758 (+)
G1517015 NA other upstream 1289420 11633067 ~ 11634979 (+)
LOC118941092 LOC106575823 other upstream 1831845 10978682 ~ 11092554 (+)
G1517456 LOC106575727 other downstream 10018 12934654 ~ 12936278 (+)
G1517457 NA other downstream 12887 12937523 ~ 12942494 (+)
G1517545 NA other downstream 262465 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1510126 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1574150 14498786 ~ 14499137 (+)

Expression


Co-expression Network