G1517458


Basic Information

Item Value
gene id G1517458
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12947371 ~ 12956518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737037
TTGAGGCACAcgaacagtgcattcagaaagtattcagaccccttttccacattttgttatgttatagcctAATGCTTCAGATTAGGAGTTGACTGTAACTGAATCATCAGACAGTTAAGAGTCCCTACCGGGGGTAGATTTGACTGGGACACAGAGTAGGACAGGGGTGCTCCACTTGCTCCAGAGGCCGTTGTTCTGGGAACGGCATCTCACCCTGACAATGTACTCTCCTACCGGCAGATCCAGCAGCTCCAGACAAGGCTCTCTCAGCAAGCCCTTCACCTGCAGACACACAGGGGGTGATAGTGAGCTGTCAGTAGCAGTTACAGTACACATccatcatttagcagatgctcttatccagagcaatttacagtagtgagtacatacattttcatacatttttcatactggtcccccatgggaatcaaacccacaaccctggcgttgcaagcaccatgctatACCAAATGAGCTACACGGGATAGAGGTGACAGAAGGTGATGAGTAGTGTGATACTGGTTAAAGTGCCAGTTTAAAAATCCGATACTGTTGAAATAATATGGTACTGTTTAAAAAAAGATGTTTCACCGTTCAGCCAGACTAAACCATGAAGCCATAGAGAGCTGCTGCgtttctgtttgtttctgttctttctcttctctcatctGACAAAGAGGCAGGATCATCGGTCGTAACGTGGGTAACAGACAAACTCCCGGTTTAACTGTGAAATAAGCACATCTTCCTCTTAAAGAATCAATCAAGGACATGACATGCTTCCCACATCACACGCTTAACACCCTCAAATGGTGTTGATAAACACTGCACctacacccctccctctctctccttcccccgctctctttccccctcttcctctctctctctctttcccccgctctttccccctctacctctctctctttcccctgctctctttccccctctacctctctctctctcattcccccgcTCTCTTTagccctctacctctctctctctctcattcccccgctctctttccccctctacctctctctctctctctcattcccccgcTCTCTTTagccctctacctctctctctttcccccgctctctttc

Function

NR:

description
PREDICTED: prolactin receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737037 True 1106 lncRNA 0.48 2 12947371 12956518

Neighbor

gene id symbol gene type direction distance location
cd3z cd3z coding upstream 48636 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 61740 12882511 ~ 12885631 (+)
LOC110495518 LOC106574650 coding upstream 68260 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 117821 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 293615 12622325 ~ 12653756 (+)
gp91phox cybb coding downstream 118546 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 146111 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 176599 13133117 ~ 13134843 (+)
LOC118941100 NA coding downstream 433511 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 493639 13450157 ~ 13451678 (+)
G1517454 NA non-coding upstream 17403 12928924 ~ 12929968 (+)
G1517452 NA non-coding upstream 22735 12924399 ~ 12924636 (+)
G1517416 NA non-coding upstream 44391 12898810 ~ 12902980 (+)
G1517418 NA non-coding upstream 65379 12880736 ~ 12881992 (+)
G1517422 NA non-coding upstream 70101 12856514 ~ 12877270 (+)
G1517465 NA non-coding downstream 3623 12960141 ~ 12980331 (+)
G1517467 NA non-coding downstream 5811 12962329 ~ 12968558 (+)
G1517468 NA non-coding downstream 7697 12964215 ~ 12970187 (+)
G1517489 NA non-coding downstream 66532 13023050 ~ 13024564 (+)
G1517501 NA non-coding downstream 87182 13043700 ~ 13047381 (+)
G1517457 NA other upstream 4877 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 11093 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 75208 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1006266 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1303613 11642789 ~ 11643758 (+)
G1517545 NA other downstream 230583 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1478244 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1542268 14498786 ~ 14499137 (+)
LOC110495481 LOC106574739 other downstream 1599808 14556326 ~ 14558589 (+)
G1519733 NA other downstream 1857464 14813982 ~ 14814886 (+)

Expression


Co-expression Network