G1517459 (LOC106575727)


Basic Information

Item Value
gene id G1517459
gene name LOC106575727
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12948307 ~ 12948739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737039
ctccatcttgcgtgctctctctctctctctctctctctctctctctctctaccttccagtTGTTGGGCTCGGTGATGCGTCGGTACTGCAGCTCGAAGACCAGGGTGATCCAACCGTACTGGATGTGGGAGGGATTGGGGTAAACCCAGGACACCATGGCGGTGCGGCCAGCTTCCTCCTCCGTCTCGTTCAACAGGGTGTAGGTCAAGTTAACCGGAGCCTCTGTCTCCActgcagacaaacagacagacaagaaAACTGCATGGTGTGGGCTTGTTATGGTTGTATGCTTcacagggagagaagaagagctaGAACGTAAATAGAGAAACAAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737039 True 335 lncRNA 0.53 2 12948307 12948739

Neighbor

gene id symbol gene type direction distance location
cd3z cd3z coding upstream 49572 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 62676 12882511 ~ 12885631 (+)
LOC110495518 LOC106574650 coding upstream 69196 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 118757 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 294551 12622325 ~ 12653756 (+)
gp91phox cybb coding downstream 126325 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 153890 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 184378 13133117 ~ 13134843 (+)
LOC118941100 NA coding downstream 441290 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 501418 13450157 ~ 13451678 (+)
G1517454 NA non-coding upstream 18339 12928924 ~ 12929968 (+)
G1517452 NA non-coding upstream 23671 12924399 ~ 12924636 (+)
G1517416 NA non-coding upstream 45327 12898810 ~ 12902980 (+)
G1517418 NA non-coding upstream 66315 12880736 ~ 12881992 (+)
G1517420 LOC106574661 non-coding upstream 82957 12864530 ~ 12865350 (+)
G1517465 NA non-coding downstream 11402 12960141 ~ 12980331 (+)
G1517467 NA non-coding downstream 13590 12962329 ~ 12968558 (+)
G1517468 NA non-coding downstream 15476 12964215 ~ 12970187 (+)
G1517489 NA non-coding downstream 74311 13023050 ~ 13024564 (+)
G1517501 NA non-coding downstream 94961 13043700 ~ 13047381 (+)
G1517457 NA other upstream 5813 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 12029 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 76144 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1007202 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1304549 11642789 ~ 11643758 (+)
G1517545 NA other downstream 238362 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1486023 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1550047 14498786 ~ 14499137 (+)
LOC110495481 LOC106574739 other downstream 1607587 14556326 ~ 14558589 (+)
G1519733 NA other downstream 1865243 14813982 ~ 14814886 (+)

Expression


Co-expression Network