G1517501


Basic Information

Item Value
gene id G1517501
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13043700 ~ 13047381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737083
GTTGAACTTGGTAGGCTTCTCTGAGAGCGGAGCAGTCCACCACAAGGATGGGCCGTGGGTGTCTGGATTTGGGGTTGCCGTTCCcgacCCATAGTCTGGTCGTCGTCCAGACTGGAAGATCTGGGCAGTAACTTAGGCAGATGTtaacaacgcacacacactcatgaaatatatataattacattCATTCCCCAATGAGCGGCATTGTGGCACTAAGTGATAGTTGTATGGGGACTTTGTTTATGGCTCTATCACTTCCTAAGTGTCAAAGGAACTGAACCGAAAAGGAATGAAAGCATAAACAAAAGATATAAAAAATATAGTTCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737083 True 330 lncRNA 0.45 2 13043700 13047381

Neighbor

gene id symbol gene type direction distance location
cd3z cd3z coding upstream 144965 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 158069 12882511 ~ 12885631 (+)
LOC110495518 LOC106574650 coding upstream 164589 12874477 ~ 12879111 (+)
LOC110527205 pcid2 coding upstream 214150 12749923 ~ 12829550 (+)
LOC110497015 tmem131 coding upstream 389944 12622325 ~ 12653756 (+)
gp91phox cybb coding downstream 27683 13075064 ~ 13080819 (+)
LOC110495507 LOC106574647 coding downstream 55248 13102629 ~ 13132209 (+)
LOC118941099 LOC106574646 coding downstream 85736 13133117 ~ 13134843 (+)
LOC118941100 NA coding downstream 342648 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 402776 13450157 ~ 13451678 (+)
G1517489 NA non-coding upstream 19136 13023050 ~ 13024564 (+)
G1517465 NA non-coding upstream 63369 12960141 ~ 12980331 (+)
G1517468 NA non-coding upstream 73513 12964215 ~ 12970187 (+)
G1517467 NA non-coding upstream 75142 12962329 ~ 12968558 (+)
G1517458 NA non-coding upstream 87182 12947371 ~ 12956518 (+)
G1517506 NA non-coding downstream 3846 13051227 ~ 13052078 (+)
G1517511 NA non-coding downstream 12987 13060368 ~ 13060660 (+)
G1517519 NA non-coding downstream 43088 13090469 ~ 13091536 (+)
G1517528 NA non-coding downstream 89564 13136945 ~ 13137243 (+)
G1517536 NA non-coding downstream 110352 13157733 ~ 13158166 (+)
G1517457 NA other upstream 101206 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 107422 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 171537 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1102595 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1399942 11642789 ~ 11643758 (+)
G1517545 NA other downstream 139720 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1387381 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1451405 14498786 ~ 14499137 (+)
LOC110495481 LOC106574739 other downstream 1508945 14556326 ~ 14558589 (+)
G1519733 NA other downstream 1766601 14813982 ~ 14814886 (+)

Expression


Co-expression Network