G1517543


Basic Information

Item Value
gene id G1517543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13177116 ~ 13182157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737131
cctccatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctcaatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccatctctccatctctctgtaactatacctctccacctctccataactatacctctccatctctctgtaactatacctctccacctctccataactatacctctccatctctctgtaactatacctctccacctctccataactatacctctccatctctctgtaactatacctctccatctctccataactatacctctccatctctctgtaactatacctctccatctctccatagctatacctctccatctctccataactatacctctccatctctccataactatacctctacataactatacctctccataactatacctctccatctctcatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccatctctacataactatacctctccatctctccataactatacctctccataactatacctctccatctctccataactatacctctccataactatacctctccatctctccataactatacctctccacctctacatAACTATACCTTTCCATAACTATACCTTTCCATCTCTACATAACTATGCCTCTaaataactatacctctccatatctacataactatacctctccatctctacataactatacctctccataactatacctctccatctctacataactATACCTTTCCATAACTATaactctccatctctacataactatacctttccataactatacctctccacctctccataacTATAGCTCTCCATAACTATagctctccataactatacctctccataactatacctctccatctctccatctctccataactatacctctccatctctccataaccatacctctacataactatacctctccatctctccataactatacctctccatctctacataactatacctctccatctcgccataactatacctctacagtactatacctctccataaatatacctctccataactatacctctccatctctcatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccatctctacgtaactatacctctccatctctacaaaactatacctctccatctctccataattatccctctacatctctcatctctccataactatacctctccataactatacctatccttctctcatctctccataactatacctctccatctctccatacctatacctctccatctctccataactatacctctccatctctacataactatacctctccatctttacttaactatacctctccatctctccataactatacctctccatctctccataattatacctctccatctctcatctctccatctctcatctctccataactatacctcttcatctctccataactatacctctccatctctccataactatacctctcaatctctccGAAACtataccctccatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctcaatctctccataactatacctctccatctctccataactatacctctccataactatacctttccatctctccataactatacctctccatctctccataactatacctctccaactctacataactatacctttccataactatacctttccatctctacataactatacctctacataactatacctctccatctctacataactatacctctccatctctacataactatacctctccataactatacctctccataactatacctctccatctctacataactatacctttccataactatacctctccataactatacctttccataactatacctctccatctctccataactatacctctccatctctccatctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccataactatacctctccatctctccataactatacctttccataactatacctatccatctctacataactatacctctccataactatacctctccataactatacctctccatctctccataactatacctctccatctctccataactatacctctccataactatacctctccatctctccatctctccataactatacctctccatctctccataactatacctctccatctctccataaccatacctctacatcactatacctctccatctctccataactatacctctccatctctacataactatacctctccatctctccataactatacctctccatctctccataaccatacctctacataactatacctctccatctctccataactatacctctccatctctacataactatacctctccatctctccataactatacctctccatctctccataaccctacatctacataactatacctctccatctctacataactataactctccatctctccataattatacctctccatctctcatctctccataactatacctctccatctctcatctctccataactatacctctccataactatacctctccatctctcatctctccataaatatacctccccatctctccataactatacctctccatctctacataactatacctctccatctctccataactatacctctccatctctccataaccatacctctacataactatacctctccatctctacataactatacctat

Function

NR:

description
PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737131 True 3065 lncRNA 0.40 3 13177116 13182157

Neighbor

gene id symbol gene type direction distance location
LOC118941099 LOC106574646 coding upstream 42273 13133117 ~ 13134843 (+)
LOC110495507 LOC106574647 coding upstream 44907 13102629 ~ 13132209 (+)
gp91phox cybb coding upstream 96297 13075064 ~ 13080819 (+)
cd3z cd3z coding upstream 278381 12886095 ~ 12898735 (+)
LOC110495515 creg1 coding upstream 291485 12882511 ~ 12885631 (+)
LOC118941100 NA coding downstream 207872 13390029 ~ 13392754 (+)
LOC118941043 NA coding downstream 268000 13450157 ~ 13451678 (+)
LOC110495498 LOC106574751 coding downstream 292917 13475074 ~ 13503268 (+)
LOC110495496 NA coding downstream 334185 13516342 ~ 13518076 (+)
trnaa-ugc-135 NA coding downstream 334805 13516962 ~ 13517036 (+)
G1517540 NA non-coding upstream 10651 13166237 ~ 13166465 (+)
G1517539 NA non-coding upstream 11240 13165654 ~ 13165876 (+)
G1517536 NA non-coding upstream 18950 13157733 ~ 13158166 (+)
G1517528 NA non-coding upstream 39873 13136945 ~ 13137243 (+)
G1517519 NA non-coding upstream 85580 13090469 ~ 13091536 (+)
G1517544 NA non-coding downstream 3687 13185844 ~ 13186079 (+)
G1517551 NA non-coding downstream 36290 13218447 ~ 13218661 (+)
G1518292 NA non-coding downstream 120436 13302593 ~ 13302811 (+)
G1518359 NA non-coding downstream 258403 13440560 ~ 13440830 (+)
G1517457 NA other upstream 234622 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 240838 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 304953 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1236011 11940062 ~ 11941897 (+)
G1517019 NA other upstream 1533358 11642789 ~ 11643758 (+)
G1517545 NA other downstream 4944 13187101 ~ 13188080 (+)
G1519096 NA other downstream 1252605 14434762 ~ 14436120 (+)
G1519538 NA other downstream 1316629 14498786 ~ 14499137 (+)
LOC110495481 LOC106574739 other downstream 1374169 14556326 ~ 14558589 (+)
G1519733 NA other downstream 1631825 14813982 ~ 14814886 (+)

Expression


Co-expression Network