G1518557 (LOC106575650)


Basic Information

Item Value
gene id G1518557
gene name LOC106575650
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13803381 ~ 13806693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1738422
TTGTTTTAATCACTTCATCTTTATTTAGAAAAACAATAATAGTGCCAAAAACATTATACTAAGTCCTTCATTTGGTTATATGTTTAGCACCATTGTCAGGTAACGTTTCTTTTTTCCTTCAAGGCAGTCTCAACAGGTATACACATTTACAATTTCAGACAAAATCAGTAGTTAAACAAATAAATGACAGAGAGGAATACTGCCACATACCTTAGAGAAGTGTGGTTGACTTTTAAACTTAATGTGCATATTGGAAATGTTGACTATACACACCTTCAATCTCCCATAACTCCCATTTATTTATTAATGCACAACAGATGAAATGGGCAACTTACAACCAAATGTCTTCACTATGTTGCAtatcaattttattttattttaggttCCAAACCATGAAACCATCTCATTTCCAAATATGATatcaataaataaaaatggtaGACACTACTGCATAATCTGGAACAACGTGAATAAATTGATGATGATAAAAAAGAAATCAATCTGTCGTGGAGGAACTATGGGATCAGGAAAATCATGTTGTTAAAGGGGAACATACTGTGAATGTAACAGTGTTACTTATATGCCAAAAGTATAATCTGGCATGAAATAAAGACATTAGAATGTCTTCTGAAAAGTCCACACATGGAAGAATAACCTCTGAAGAATAATTGTGTACTAACATTAGGTATGCATGACAGGTAAAGCTGATGCGTTGATGCTTGCTTATGAAAGCTGCGGCAGACGGCTAGCCCTTTAGTGGCGTCATAATGGCTGTGACTGTTGGAATGCTAAGAACGGATATACTGAGTGCACATAACATAAATCTGATAtgcaaatataaaatacaaacaAATGCTATGTATTCACATAAGGAGAAGAACATGTTGGGCAAATGTAATAATTCCATCCTGAAAATAGTTCTCTTTAATAAAAAATAACACACGGTTTCCAATGTAATATGCTGCTATCCACAGTAGCGCCATAGCATGTCAGCAACCATGTTTTCTCTATAAACACTGTCAATCACGTGAGGTGGATGACACTGCTACAACTGGGATAGTCAGTATTCTCAATCATTTGCAACATTTTTACCCCCTATTAACCAAAAGAAATTGTAATTTGCAAAATTATCTGAATATCAACATGCAGACATCTCAAATAATTTATCTGAGGGTTTTGCCAAATTAATTTCTGGGGTAAATTAAATGTATTGCAGagattgatttttatttttttttcacccatctaATACTGCAATACAAAGGCAGAAACATACTATAGCTGTAGCACTCCTGCATACTTCTGAGCCGAGTTTTCACCGTTGTCATGTGTCACTATTGAggtcaacattttaaaatgaataaaaCAGCTATGGAGTGAGTTGTGGTGTGGATgccctttttgttgttgttgatctttACATTGGGTACAATAAATATCCGGAGAATGAAGAGTGGACATATTGACCGGCATAAAGTCCTGCTGCCTGGTCAGATGGAAGCTGTACATGCACAGTGTCTCCTTGCTGTAAGGGGAGCACAGCACTCCCTGACGCCTGGTCCAGGCTGCCCTTTTTGTACTCATCATATGTGTACATCACAGGCTCATTGTTCTTGACCAGCGCCACCCACACATTCGCTCCTTTGCAGTGGACGTGGTAAGCAAAGTAATAGATTCCCGGTATGGTACAGCTGAAGACGCCGGTTTGGGGATTGTAGTCCTGATGGCCATTGTACAGGAGCTTGTCGAAGACCACAGGGGAGCCTACGGGGGGGAAAGGATTGGTGAGCTGAGCCGTGAATGCTGGCATCTCCAGGCCGTTCCTGTCCCCTCCATTCTTTGGTTTCTTGTAACCGCCTTGTTTAAGACCGTCCAGACCAGGACCCAGCTCAGGGAGGATTTCACCAAGACCAGGTGGTTGGGTGGGGGGTCCGGGCTGACCAGGGGGTCCACCGTTGCCAGGTTTCCCTTGGGGCCCTAAAGCGCCTGGAACACCAGGTTTACCTTCGCCGGGGTAGCCAGGTTTCCCTGGAGGACCAAGCTCGCCTTTTGGCCCAGGAAGACCGGGAGGACCAAGTGGCCCACCTGGACCAAAATTTCCAGGGATTCCCTTGGGTCCCTGGTGACCTTTTTCTCCAGGCATTCCACCTTCTCCCCTTGAACCGGGCATTCCAGGAGCTCCAGGGAGGCCAGGTAACCCTTTGTGGCCGTTATCCCCTTTCGGACCCAGTGGCCCTGGTATACCTCTCGGTCCTGGTTGACCACCCTCTCCAGGATACCCACCCTGTCCAGGAAGCCCTGGAGGCCCTGGCTCACCTTTAGGACCTGGCAGCCCCTTTGGCCCTCCATTGCCACCTTCTCCCTTCGGACCTGGGAAACCAAGACCCCCAGGTGGCCCAATGGTACCGGGCAGGCCCGGTGGCCCGTTGGGTCCAGGAAGGCCTTCCTGCCCTGGGAGACCTCCATGACCTTTGTCACCTTTTGGGCCTGGAGCTCCAGAAAAACCTCCATGTCCTTTGTCTCCTTTTGGTCCAGGATATCCTGGCTTTCCGTAACCAGGTAGGCCTGAGCCCCCTGGCAAACCTGGTGGGCCTGATTCCCCTTTACCGCCTGGGAACCCTGGTTGTCCTGGCAAACCATCATGCCCGGGCTTGCCAATACCTGGTAGCCCAGGTGGTCCTGGTTCTCCCCCTTCACCTGGTGGACCAGCAAGTCCTCCTTCTCCAGGTGGGCCTGGTTTTCCTGCCCCCCCGGGCAATCCTGGTAGTCCATTCAGACCTGGTTTTCCAACCCCTGGCAAACCCCCTTGACCAGGAGGCCCAGGAGGTCCACCAGGTCCTTTCAAACCTGGCAATCCTGGCAAGCCAATCCCTTTGTCTCCCTTGGGCCCAGGAAGACCAGGCAATCCAGGTATGCCCTTGTGTCCAGGCTCCCCTCGAGGCCCAGGCTGCCCAGGCAGTCCCTGACCCCCTGGCTTCCCGATGCCTGGCAGGCCTGGTGGCCCTGGAAGACCTGGCCCCCCAGGCATCCCCATTGGTCCTACATCCCCACCAGGACCAAGGTCGCCCTTCGGACCAGGCTGGCCACCTCCACCAGGTTTACCGGGCATTCCCGGCATTCCTGGTTTTCCTATCCCAGGATACCCTTGGGGACCAGGAGGGCCTGGTTTTCCATGGGGGCCGGGCATCCCTTGACCTAGCATCCCTGGagggccctgtggtcctggaggCCCTTGGGCTCCTGGTGGCCCCTCGGGACCAGGACCCTGTAGTCCCCT

Function

NR:

description
collagen alpha-1(VIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1738422 True 3277 lncRNA 0.49 2 13803381 13806693

Neighbor

gene id symbol gene type direction distance location
LOC110495495 LOC106574775 coding upstream 180563 13592980 ~ 13622818 (+)
LOC110497006 LOC106574795 coding upstream 247029 13520158 ~ 13556352 (+)
LOC110495496 NA coding upstream 285305 13516342 ~ 13518076 (+)
trnaa-ugc-135 NA coding upstream 286345 13516962 ~ 13517036 (+)
LOC110495498 LOC106574751 coding upstream 300113 13475074 ~ 13503268 (+)
LOC118941229 NA coding downstream 4543 13811236 ~ 13811288 (+)
LOC110495487 LOC106574771 coding downstream 77263 13883956 ~ 13969189 (+)
LOC110495485 LOC106575653 coding downstream 168417 13975110 ~ 13979887 (+)
LOC110495483 LOC106575569 coding downstream 280365 14087058 ~ 14485956 (+)
LOC110495481 LOC106574739 coding downstream 750283 14556326 ~ 14558589 (+)
G1518505 NA non-coding upstream 3420 13796612 ~ 13799961 (+)
G1518478 NA non-coding upstream 83979 13678094 ~ 13719402 (+)
G1518500 NA non-coding upstream 87979 13710766 ~ 13715402 (+)
G1518491 LOC106574768 non-coding upstream 92707 13689041 ~ 13710674 (+)
G1518453 NA non-coding upstream 166422 13636564 ~ 13636959 (+)
G1518613 NA non-coding downstream 162612 13969305 ~ 13969757 (+)
G1518614 NA non-coding downstream 163854 13970547 ~ 13970890 (+)
G1518612 NA non-coding downstream 164895 13971588 ~ 13972418 (+)
G1518993 NA non-coding downstream 166067 13972760 ~ 13972963 (+)
G1519100 NA non-coding downstream 294072 14100765 ~ 14104118 (+)
G1517545 NA other upstream 615301 13187101 ~ 13188080 (+)
G1517457 NA other upstream 860887 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 867103 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 931218 12833651 ~ 12872163 (+)
G1517150 NA other upstream 1862276 11940062 ~ 11941897 (+)
G1519096 NA other downstream 628069 14434762 ~ 14436120 (+)
G1519538 NA other downstream 692093 14498786 ~ 14499137 (+)
G1519733 NA other downstream 1007289 14813982 ~ 14814886 (+)
il8r il8r other downstream 1091563 14898154 ~ 14901354 (+)

Expression


Co-expression Network