G1519579


Basic Information

Item Value
gene id G1519579
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14530073 ~ 14531837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1739633
AAAACATCTAACCACAATAAAAAGAGTTAAAGTGGTTTCACCATCATGATCCATGTCATTATTTAGGGCCAGAACTGTACCCATTACATCATCTCTGAACTACACAATTTTCCAGCAGCTAGGcctagggttaggggagggtttggccgaggtaggccgtcattgtaaataagaatttgttcttaactgacctgcctagttaaataaaggtaaaataaataaataatctgaCAGTACAGATagactgccatctagtggacaatgTCTGACAGTACAGAAAGACTGCATTCTAGTGGACAATGTCTGacaagacagagagactgacatcTTGTGGTCAATGGAAGCACTTGCATGACCATAATGTTCAGTATAAGCAGACTACTGCATtgcatcacacacacaaccacccttCCACACCTATAGCCACAGTCCACACATAGGGCCAAACCCGtccacgcgcacacgcacacatagtAGAGGTGTACACTAGAGACTTTAGGGACTTATATGAGACAGAACCCAAAGGCAGTTTACTTTGTCAACACTtaaaatgaaatatattttttacaaaacaGAAGAAGAACAACATTTCATACCGAAGAGCTGCTTGTCGTTTGCAGAGGGAACTTTACACAGGACTTTAAATGGTAACACTCTACTCCAGGCAGAGAGACATAACCCCTACATAACACACTGTCAGAAGCATGACAAAGCAGTTTCTTTTTTTATGCTACGACAGTTCAGACAGGCACTACGCCCTTTTTACGACAGTGCTCATAAGGCGCTATGTCATGTCACCGCAAGTAAAGTGTTATAAAGAGTTTGTCACAATGAGCTCTTTTAGTATTATTATACACACACTGGCTCTTGGCATCACTCATATGACTTACGAACCACTGAAACATTTACACACCATAAAAATGCATCTCCTTCCATTGAACTTAAAACAGTAATACTCTTTTAAGACGACAGTTCTGAAATGGCGGACCTATAGGATTGGACGTCCCACTCCGTATCCCCTCCCATTCCCACAACATATCAAATAGGGACAATTTACATACACGGCTCACTCTTATGGGCCTGCAGGACTGGGGGGTGTGCATAGGAGTCAGAGTCTTCTGCCCCAGCCGCATGCAGGGTGACCGTGTTGGATTATGTTGTTTTCTTCCCTTCTCCTGTCCGTCCATCCAGATAAGAGGGATGCCCTCTGGCTTGGACACCTGTGCTTTGGCGGTGACCAAGCACACGCTCTGACCGAGGAGAATCATCGctttacagagagaaagagagagagaaagaaacagaggggGGAGAGCACCTGTTCTCTCCATTGTGCAAACTGAGATGTAAACAAACAGGGTATGTAGGGAATGAAGAGAGTTCAGGGGGGTGCTCCAACGATTTGATTGACAGATACCGTGACctctgaaataaataaaataaaagggaTAGGGGGAGGGGTGTTCACTGTGCTTTTCTATCCGCCCAATAGGACGTGGTGTCACTGCGGCAGTGGCGACTGTGCGAGAGGGACCTCCGCTGTCTCTGAGGGGCGGAGCACGAAGAGTATGAGGCAGCCAAGAGGAGTAAGGGGTCAGGAGGTCACACGGCAAGCTTCCGACTGACGACCATAGGAAATGCCTTATACAAAGTAAACAGCAACAAACACTCATCACCATGTGTCACATCTGTCCTCCTCACTATCTCGCCTCAGACAGCTGTCGCTGTAACGATACAAAAAGAAATAAGGTAgaaaatgtccccc
>TU1739630
AGGCAGTTTACTTTGTCAACACTtaaaatgaaatatattttttacaaaacaGAAGAAGAACAACATTTCATACCGAAGAGCTGCTTGTCGTTTGCAGAGGGAACTTTACACAGGACTTTAAATGGTAACACTCTACTCCAGGCAGAGAGACATAACCCCTACATAACACACTGTCAGAAGCATGACAAAGCAGTTTCTTTTTTTATGCTACGACAGTTCAGACAGGCACTACGCCCTTTTTACGACAGTGCTCATAAGGCGCTATGTCATGTCACCGCAAGTAAAGTGTTATAAAGAGTTTGTCACAATGAGCTCTTTTAGTATTATTATACACACACTGGCTCTTGGCATCACTCATATGACTTACGAACCACTGAAACATTTACACACCATAAAAATGCATCTCCTTCCATTGAACTTAAAACAGTAATACTCTTTTAAGACGACAGTTCTGAAATGGCGGACCTATAGGATTGGACGTCCCACTCCGTATCCCCTCCCATTCCCACAACATATCAAATAGGGACAATTTACATACACGGCTCACTCTTATGGGCCTGCAGGACTGGGGGGTGTGCATAGGAGTCAGAGTCTTCTGCCCCAGCCGCATGCAGGGTGACCGTGTTGGATTATGTTGTTTTCTTCCCTTCTCCTGTCCGTCCATCCAGATAAGAGGGATGCCCTCTGGCTTGGACACCTGTGCTTTGGCGGTGACCAAGCACACGCTCTGACCGAGGAGAATCATCGctttacagagagaaagagagagagaaagaaacagaggggGGAGAGCACCTGTTCTCTCCATTGTGCAAACTGAGATGTAAACAAACAGGGTATGTAGGGAATGAAGAGAGTTCAGGGGGGTGCTCCAACGATTTGATTGACAGATACCGTGACctctgaaataaataaaataaaagggaTAGGGGGAGGGGTGTTCACTGTGCTTTTCTATCCGCCCAATAGGACGTGGTGTCACTGCGGCAGTGGCGACTGTGCGAGAGGGACCTCCGCTGTCTCTGAGGGGCGGAGCACGAAGAGTATGAGGCAGCCAAGAGGAGTAAGGGGTCAGGAGGTCACACGGCAAGCTTCCGACTGACGACCATAGGAAATGCCTTATACAAAGTAAACAGCAACAAACACTCATCACCATGTGTCACATCTGTCCTCCTCACTATCTCGCCTCAGACAGCTGTCGCTGTAACGATACAAAAAGAAATAAGGTAgaaaatgtccccc

Function

NR:

description
LOW QUALITY PROTEIN: peripheral plasma membrane protein CASK-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1739633 False 1765 lncRNA 0.45 1 14530073 14531837
TU1739630 True 1242 lncRNA 0.46 1 14530596 14531837

Neighbor

gene id symbol gene type direction distance location
LOC110495483 LOC106575569 coding upstream 44117 14087058 ~ 14485956 (+)
LOC110495485 LOC106575653 coding upstream 550186 13975110 ~ 13979887 (+)
LOC110495487 LOC106574771 coding upstream 560884 13883956 ~ 13969189 (+)
LOC118941229 NA coding upstream 718785 13811236 ~ 13811288 (+)
LOC110495495 LOC106574775 coding upstream 907255 13592980 ~ 13622818 (+)
LOC110495481 LOC106574739 coding downstream 25139 14556326 ~ 14558589 (+)
LOC110495476 LOC106575616 coding downstream 56814 14588651 ~ 14643860 (+)
LOC110495457 LOC106573985 coding downstream 221599 14753436 ~ 14764586 (+)
LOC110496915 LOC106575634 coding downstream 247253 14779090 ~ 14780827 (+)
zgc:92380 LOC106575639 coding downstream 261100 14792937 ~ 14799311 (+)
G1519578 NA non-coding upstream 363 14529089 ~ 14529710 (+)
G1519562 NA non-coding upstream 2281 14527578 ~ 14527792 (+)
G1519561 NA non-coding upstream 3065 14526738 ~ 14527008 (+)
G1519555 NA non-coding upstream 16645 14513032 ~ 14513428 (+)
G1519537 NA non-coding upstream 31466 14498268 ~ 14498607 (+)
G1519654 NA non-coding downstream 140402 14672239 ~ 14675705 (+)
G1519738 NA non-coding downstream 300322 14832159 ~ 14832358 (+)
G1519750 NA non-coding downstream 361615 14893452 ~ 14897145 (+)
G1519759 NA non-coding downstream 377654 14909491 ~ 14909694 (+)
G1519538 NA other upstream 30936 14498786 ~ 14499137 (+)
G1519096 NA other upstream 93953 14434762 ~ 14436120 (+)
G1517545 NA other upstream 1341993 13187101 ~ 13188080 (+)
G1517457 NA other upstream 1587579 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 1593795 12934654 ~ 12936278 (+)
G1519733 NA other downstream 282145 14813982 ~ 14814886 (+)
il8r il8r other downstream 366419 14898154 ~ 14901354 (+)
LOC110495440 LOC106575601 other downstream 677132 15207355 ~ 15251952 (+)
G1520649 NA other downstream 1224656 15756493 ~ 15816005 (+)

Expression


Co-expression Network