G1519654


Basic Information

Item Value
gene id G1519654
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14672239 ~ 14675705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1739729
TATCATTTGTAACAATGGAATGGaaagaaaacaaaaataacatttacatatGTAAACCGAGAATAGCTCTTTTTAACCACAGTGGTTTTAAATACAACTGGCTTAAGTGGATAAGAGTCTGCAGAAAATTCCCTTCCCAATCAACCACATATGGAGTGTTTTAAAGGTCCGATGTTTTAGCCATTTTCTACTTTTTGTGTCTGTTCCCAACACCCTAGAAACACTCTTAGGGTGAGACAAGCAGTCTAGATGGGTGTAATGCCACATTCATGTGGTATCAGAAGTTCCTATTTCCAACTGAGAAGTTTCACTTGAGCGAACCTCCAAGTCGGAATTTCAAGTGGGAAACTCTGAAAATGTTGTTGCCCAGGTAGGCGAGTTATGATGTTTCACcactgacctttgaccttttcaACCAAAAATAACAAATCAGTTTGACAACTACGACCTCATCATATTGTCAATGTTAAGCAATCTAGCTAACTTTATTATTAGCAACCTTGAtaagctagctaactttattATTAGCAACCTTGAtaagctagctaactttattATTAGCAACCTTAAtaagctagctaactttattATTAGCAACCTTGAtaagctagctaactttattATTAGCAACCTTGATAAGCTAGCTAAAATCCTATTGGTTGAAGAATTTTTCCGACTTCAAAAGCACTTAAACACAATCATGTCGGACTTAATTGTTCCACTTCCCCATTTCCCATGAGCATGTGAAGCCAGCATAAATACACTCTGAGATTAGCCTAGCTAATCCATATTCCTCTTACTCTAAACACAGTCAAGTCTATTGTCCATTATCTTGTTTAAGTGCTGGGTAATTTCCCTACAAAAACTGAgcatttaattattttttaaaatctaatGTGGAATTCATTTGGACAAGTCCTTTGTATCCTTAGTACACCAAAGAAGAAGAGACATTCACGCTGGGTTTTCTGGGATAGGATTTAGTCCTCCAGTTTTCTTCTACTGTGCAAATACAGTGTTACACAGACGTACAGCCAGACAGGCATGCGGACAGACAAACCATGCAGAGAATTAGATGGCGTTAAAGAAATGTTTTGTAAAGGAACATACCAAACCCTGGGGCTCTGAAACTATTCATAGGAATGGTGAATCTGAGAGCAAACACAAAGCAAAGCAACAATAAATACAATGTAAGAACATTATTGAAAACTAAAAGGAGTTATTTACTAGGGATGAGAATAGTTTGAACTACAATGAGACCATGCCAACCCACTAATATCATGACTCCGGTTTCTTGACAACCCGACTAATGTAGCTACGACAGGAAGAAGTGATGTCACAACATTTTCTGAAGTTGAGGTATGCTAATGTACAGTAACCATGGCAACACAGCAGTAACCATGCTATCAAATCAACAACAGTGTGTTATGGTGTCAAAAGTAACCTCGGTATGTCATTTTGGTTGGTCCCAATGAAGTCAAACGCGAAAGCGAAGTGTCTTTAAAATGCCCCATGCTAGTCTAGTCTAGTCAAGCTACAGTGCAGCCAGGAACAATACAGTACAAAAACAAACCAGTGTGCTCCCCTTTTTGTGTTCAGAGTGATGTGTGGAACAGAGACCAAATCCACTGCTGCTGAGTGCAGGGCTGCTCCAACCAGGGACAGTTTAAAACAGTCAACCTCAACTCCCCACATAAGGTTTTTAGAGCTATTTACTGGAGTGAGACCATCTTTGCCATAGCTATTCTCTTTCACAACGTCATAGCTCTCATGTAGGCTACGGATATAATATATTTCTAGGCTTTCCATGTAGAACCTCTCTGTAAACAGGATCATTCTGTAAGTAAATAGACCATTTCTGGAATCATGGTATAAAGTAGAAAGGCTGATCATCCCAATGCATGATGAGGACACTAAGAGCAAGTGGCACATCAACTGTACAGAGTAACAACGCAAAATGACAAATATGCAAATATAAAAAGTATGTTCAAAACTAGAGATTTTCATACATGCCAAAAATAGAATTGTCACCCACTTGAGATGGTTGATTAAGAAAAAGTTGATGATGGTATAGTCAATTGACTAGCTCGATGTGGAAATGATAGTTTCAAAGATGGCAAATTAACACACTTTACAATATGTTCAATTCAATATACATGACAAGATGTTTATAGTAACTATTAACTAAGGTAGTTGCCAAACAATACATTGGAATTCAATAATTATTTAACCAAAAAGGTTGAGACATACATGTTTGATCCGTTAGCTCTCGAACAGTGTGCTTGGTATGAAAAGCCAGTAGTAATACTGTGTATGCCTGCTGTTACTAGTGGTACGAAAGAGCTGGATGCAAACTCATGCTTTGGCTTTTTTTTTGCTCGACTAGTTCTTTTTGGATAACTTTCTAACCTTGCAACCGACAGGTCTTTCTGGTGAGACATGCTTTTTCTCCGTTAGCGATTGGTTATGTGATAAAGGGAAGCTACATAAGGCTAAATGCTAACCTTCAACAGTGCTTTACGAATCAACTGGAAGTTGAACGTTTCAAATGTTTGCTTGCAACTACCTTTTTGAAGCATTTTTACAGAAAAATATATCAATCCAAAGGTATAATGACCTCTAAAAGAGGCTGTGAGAGACAAACGCTGTCTACATCACAATCCTGGTAAACATGCTGAAAGATCATTTTTTCCACCATCCCGTCCTCTGTCAAACAggaaaatgtatttctctctctcccctggtcagGATCATCATTTAAGGCAATCTTCATTTCTGACACAATCCTGAAATCCATCAGAGCTTCACAAAGGCACTCTCTCATTGGTGGATCCTCCATCACAGAACTACCAGCTGCATCAGTAAGGCAAAGATCCAATAGCCTCATCATCCAATAACGGCCAACGCTTGCTCAACGGCCAACCACAGTCAAGTCTACTGTCCTCAGCCAATGACAGCCCGACAATTCTCCTAGGGGCTTTGTTGTCCGCCATCTCTCATCAGTAACCACCATCTCCATCAGTAGCATGTCCTCCATTTAGCGGGACAAAAGCAGGAGAGAAAATAAATGTCCACGCTGTGTGTGACAGCCGGACTTGTCCTGTCATCTGTCTCCATATTTGGCCACGGGGGAGCTCTGTAAAGCACCAGATCTTTCCCTTCAGGAGTAAGACTTCCATTATCCGCCTCCACTCCGAGAACCCACGCCCTGCCTCGGTGCTAGGGTGTCTTCTGGGGCTGCCTCAGTCTGACTGGCAGAAACAAACGGTGAGCTGACCACGCTGAGCTGCCTGGCTGCAGCGCTTTGTCACTTCCGTCCTTCATATCGTATCCCCATTGACTCCCTACTCTGaagcccatccctctctctcattggcAGAGGAGCTGCCAATCAAGGTGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1739729 True 3402 lncRNA 0.40 3 14672239 14675705

Neighbor

gene id symbol gene type direction distance location
LOC110495476 LOC106575616 coding upstream 28379 14588651 ~ 14643860 (+)
LOC110495481 LOC106574739 coding upstream 113650 14556326 ~ 14558589 (+)
LOC110495483 LOC106575569 coding upstream 186283 14087058 ~ 14485956 (+)
LOC110495485 LOC106575653 coding upstream 692352 13975110 ~ 13979887 (+)
LOC110495487 LOC106574771 coding upstream 703050 13883956 ~ 13969189 (+)
LOC110495457 LOC106573985 coding downstream 77731 14753436 ~ 14764586 (+)
LOC110496915 LOC106575634 coding downstream 103385 14779090 ~ 14780827 (+)
zgc:92380 LOC106575639 coding downstream 117232 14792937 ~ 14799311 (+)
LOC110495453 il8r coding downstream 159689 14835394 ~ 14842885 (+)
LOC118941101 il8r coding downstream 183017 14858722 ~ 14861844 (+)
G1519579 NA non-coding upstream 140402 14530073 ~ 14531837 (+)
G1519578 NA non-coding upstream 142529 14529089 ~ 14529710 (+)
G1519562 NA non-coding upstream 144447 14527578 ~ 14527792 (+)
G1519561 NA non-coding upstream 145231 14526738 ~ 14527008 (+)
G1519738 NA non-coding downstream 156454 14832159 ~ 14832358 (+)
G1519750 NA non-coding downstream 217747 14893452 ~ 14897145 (+)
G1519759 NA non-coding downstream 233786 14909491 ~ 14909694 (+)
G1519751 NA non-coding downstream 235891 14911596 ~ 14921517 (+)
G1519752 NA non-coding downstream 243000 14918705 ~ 14919404 (+)
G1519538 NA other upstream 173102 14498786 ~ 14499137 (+)
G1519096 NA other upstream 236119 14434762 ~ 14436120 (+)
G1517545 NA other upstream 1484159 13187101 ~ 13188080 (+)
G1517457 NA other upstream 1729745 12937523 ~ 12942494 (+)
G1519733 NA other downstream 138277 14813982 ~ 14814886 (+)
il8r il8r other downstream 222551 14898154 ~ 14901354 (+)
LOC110495440 LOC106575601 other downstream 533264 15207355 ~ 15251952 (+)
G1520649 NA other downstream 1080788 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other downstream 1120647 15796262 ~ 15801788 (+)

Expression


Co-expression Network