XLOC_003451 (rnpep)


Basic Information

Item Value
gene id XLOC_003451
gene name rnpep
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24758967 ~ 24783118 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006754
ACTGTCATGTCTTCACGACAAACAACAGTGCGCTGTAATAACGCAGCGAGGTTCGGCGTTAGTCCTATCCGTTTACCTTATCGATTAGTCTTCCAACCACGGTTCACTTGTCATTTCTGGGTGAAGAAGTAAGCATACCGCTGCTTTCCAACCGGTGTTTCTGTAGCCCGTTGGGTCTATTGTTGAAGAGAAAATTGTCGTTACTGCAATGgataaaagtaaaacattaaCGCTGTACTCAGACAAAGCCGAAGACGTCGCGACGTCCTCTAGTTTTCGCCAGTTTAAAATAGAGCATTTTCATCTCGACCTGAAAGTGGACTTTTTGCAAAAATCAATTTCAGGAACCGAGACGATAGAACTGCAGTGCATTCAGGACAGTCAAAGTGAGTTACAGCTAGATATTCATCCATCTCTGTCTGTTCATGAAATCACATTGAGCCAGAATGCGCGTGACTGGACCAGAACAGAATTCCTGACTCAGGATTTCACCAGTTACGGGACAACACTGCTGGTGAAGTTTCCCACTGCTTTCAGCTCAGATGACAAACTTCAGCTTGCAATCAGATATACAGCTACTGATGGGCCAGGGGTGTGTTGGCTGGAACCGGAGCAGACAGCGGGAAAGCTCAAGCCTTATGTTTTTACGCAAGGCCAGGCTGTTCTCAACCGCTCCTGCTTCCCGTGCTTTGATACTCCAGCAGTCAAGAGCACCTACTCAGCAGCAGTTCAGGTGCCTGATGGCTTCACCGCAGTTATGAGCGCTAATAAATGGGAGCAGAGGAAAGCAGACGGGGCTTTCTTGTTCACTATGGAGCATCCTATTCCTGCTTACCTGGTAGCACTGGCAGTGGGAGACCTGCAGTCTGCAGAGGTGGGACCCAGGACACGTGTTTGGACCGAACCTTGTTTACTACAGGCAGCCAAGCAGGAGTATGATAATGTGATTGAAGACTTCCTGTCTGTTGGAGAGAAACTGTTTGGACCCTACGTTTGGGGAAGATATGATGTGCTTTTCATGCCTCCGTCATTCCCGTTCGGTGGGATGGAGAACCCCTGTCTGACGTTCGTGACCCCCTGTCTGCTGGCCGGCGATCGCTCTCTTGCTGATGTCATAGTGCACGAGATCTGCCACAGCTGGTTTGGAAACCTGGTCACCAACGCCACGTGGGGGGATTTCTGGCTAAATGAAGGCTTTACCATGTACGCCCAGCGCAGGGTCTGCAGGGAGCTCTATGGAGAGGCTTATACGTGTTTGGAAGCAGCAACTGGTAAAGCTCTTCTGCGACAGCACATGGACAATACTGGAGAAGATCATCCTCTCAATAAACTACGGGTTAAGATTGAACCGGGTGTCGATcctgatgacacgtacaatgaGACGCCCTATGAGAAAGGATTCTGCTTTGTGTCCTACCTGGCACACCTGACAGGAGATCAGTCACGCTTTGACACATTCCTCAAGGCTTATGTGGAGAAGTTCAAGTTCAGAAGTGTGCTGGCCGAGGATGCGCTGGAGTTTTACCTGGAGTATTTCCCAGAGTTAAAGGAGAGGAACGTCCACAAAATTGAGGGTCTAGATTTTGACAGCTGGCTCAATGTTCCTGGTTGGCCTCCATATGTCCCTGACCTCTCCGCCGGCCAGACTCTGATGAAACCAGCCGAGCTGTTAGCAGAGAAGTGGCTCAGCCATAACCTGGACTTGGAATCCATCTGCAAAACTGATTTAAAATCATGGAAGACCTACCAGACCGTCTACTTCTTGGACAGGATCCTTGAGAAGTCACCTCTTCCTGATGGTAACCTGAAGAAGCTTGAAGAGTGCTACTCTCAGATCATTAAGTCCAACAACGCGGAGCTGAAAGTGCGATGGGCTCAGATTGTTGCAAAAAACCAGTATAGTCCAGGATTCCAGCACATTCGGGATTTCCTCTCAAGCCAGGGGAAGCAGAAGTACACTTTGCCTGTGTATCGGGCGCTTTGGAACGGATCAGAGGAGACGAAGGCCTTGGCGATAGAGATGTTTTCTGCCACCTCCGGTCAGCTCCACGTCAATGTCCGCAATTATGTTAAAAAGATAATAGTTTGAGCATCAAAGAATTGGGAAGATAGAAGGGAAAATAATGTATGAAATGATGTGCTTTTGAATAGGCTCTGATATCCTAAAACAGCTTTGAGCGCTAATATAATCTTTGTAAAGTGTTCTTAAATGTGGTTGAATTGTAGATAATCATTGATTTTTTTCTATAAAGTAAGTATGTGGAATTTTGGGCCATTTAATGACTGACACGATTTGAATTTCATAtggttttgcatttttattaataaatgaatcacaTTTCTAGACAGAA
>TCONS_00006755
ATTTCTGGGTGAAGAAGTAAGCATACCGCTGCTTTCCAACCGGTGTTTCTGTAGCCCGTTGGGTCTATTGTTGAAGAGAAAATTGTCGTTACTGCAATGgataaaagtaaaacattaaCGCTGTACTCAGACAAAGCCGAAGACGTCGCGACGTCCTCTAGTTTTCGCCAGTTTAAAATAGAGCATTTTCATCTCGACCTGAAAGTGGACTTTTTGCAAAAATCAATTTCAGGAACCGAGACGATAGAACTGCAGTGCATTCAGGACAGTCAAAGTGAGTTACAGCTAGATATTCATCCATCTCTGTCTGTTCATGAAATCACATTGAGCCAGAATGCGCGTGACTGGACCAGAACAGAATTCCTGACTCAGGATTTCACCAGTTACGGGACAACACTGCTGGTGAAGTTTCCCACTGCTTTCAGCTCAGATGACAAACTTCAGCTTGCAATCAGATATACAGCTACTGATGGGCCAGGGATGTCATGGCTGGACCCAGTGCAGACGGCTGAGAAGACGCTGCCATTCTTGTACACGTCTGGGTTTCCTATCCTGAACCGCAGCTTGTTCCCTGGCTTCCATACGCCCATGACAAAGAGCACTTACTTGGCTGTTGTGCAGGTGCCTGATGGCTTCACCGCAGTTATGAGCGCTAATAAATGGGAGCAGAGGAAAGCAGACGGGGCTTTCTTGTTCACTATGGAGCATCCTATTCCTGCTTACCTGGTAGCACTGGCAGTGGGAGACCTGCAGTCTGCAGAGGTGGGACCCAGGACACGTGTTTGGACCGAACCTTGTTTACTACAGGCAGCCAAGCAGGAGTATGATAATGTGATTGAAGACTTCCTGTCTGTTGGAGAGAAACTGTTTGGACCCTACGTTTGGGGAAGATATGATGTGCTTTTCATGCCTCCGTCATTCCCGTT

Function

symbol description
rnpep Predicted to enable metalloaminopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including anterior axial hypoblast; hindbrain neural plate; lens; pronephric duct; and solid lens vesicle. Orthologous to human RNPEP (arginyl aminopeptidase).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040718-241 Predicted to enable metalloaminopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including anterior axial hypoblast; hindbrain neural plate; lens; pronephric duct; and solid lens vesicle. Orthologous to human RNPEP (arginyl aminopeptidase).

Ensembl:

ensembl_id ENSDARG00000012506

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006754 False 2351 mRNA 0.47 11 24758967 24783118
TCONS_00006755 True 926 mRNA 0.48 5 24759079 24779596

Neighbor

gene id symbol gene type direction distance location
XLOC_003450 inavab coding upstream 2151 24716837 ~ 24756816 (+)
XLOC_003449 gpr25 coding upstream 54530 24703108 ~ 24704437 (+)
XLOC_003448 syt6b coding upstream 94936 24620742 ~ 24664031 (+)
XLOC_003447 BX072564.1 coding upstream 177853 24580579 ~ 24581114 (+)
XLOC_003446 rbm39a coding upstream 402874 24339362 ~ 24356093 (+)
XLOC_003452 cyb5r1 coding downstream 3260 24786378 ~ 24799675 (+)
XLOC_003453 adipor1a coding downstream 17038 24800156 ~ 24815193 (+)
XLOC_003454 rabif coding downstream 32549 24815667 ~ 24817637 (+)
XLOC_003455 kdm5ba coding downstream 36206 24819324 ~ 24851464 (+)
XLOC_003456 ipo9 coding downstream 68553 24851671 ~ 24876621 (+)
XLOC_003369 CR854846.2 misc upstream 8635885 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12046971 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12064704 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12073368 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12078939 12679732 ~ 12680028 (+)
XLOC_003442 NA non-coding upstream 448322 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 580029 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 581316 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 607750 24116083 ~ 24151217 (+)
XLOC_003463 NA non-coding downstream 276344 25059462 ~ 25060098 (+)
XLOC_003466 NA non-coding downstream 398739 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 473694 25256812 ~ 25266235 (+)
XLOC_003487 NA non-coding downstream 1046252 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1294829 26077947 ~ 26078061 (+)

Expression


Co-expression Network